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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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LYPLA1
lysophospholipase 1
Chromosome 8 · 8q11.23
NCBI Gene: 10434Ensembl: ENSG00000120992.18HGNC: HGNC:6737UniProt: A0A087X1K9
61PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
glycerophospholipase activityphosphatidylcholine lysophospholipase A1 activityprotein bindingpalmitoyl-(protein) hydrolase activityovarian neoplasmPhlebitisobesityThrombophlebitis
✦AI Summary

LYPLA1 (lysophospholipase 1) functions primarily as an acyl-protein thioesterase that removes thioester-linked fatty acids from S-acylated cysteine residues in proteins 1. The enzyme exhibits dual catalytic activities, functioning both as a protein depalmitoylase and lysophospholipase, with significantly higher thioesterase activity 1. LYPLA1 catalyzes depalmitoylation of various substrate proteins including SQSTM1/p62, GPCPD1, and trimeric G proteins 23. The enzyme plays crucial regulatory roles in cellular processes by modulating protein palmitoylation status. In autophagy regulation, LYPLA1 negatively regulates the process by depalmitoylating SQSTM1, which decreases the affinity between SQSTM1 droplets and phagophore membranes 2. Under hypoxic conditions, LYPLA1 depalmitoylates GPCPD1, facilitating its relocalization to mitochondrial membranes and promoting mitophagy 3. LYPLA1 expression is regulated by testosterone through the miR-125a-5p pathway, and its dysregulation contributes to altered global protein palmitoylation levels in late-onset hypogonadism 4. In cancer contexts, LYPLA1 overexpression promotes cell proliferation and migration in non-small cell lung cancer, making it a potential therapeutic target 5. The enzyme works cooperatively with LYPLA2 to maintain cellular lipid homeostasis 6.

Sources cited
1
LYPLA1 functions as an acyl-protein thioesterase with depalmitoylase activity, having higher thioesterase than lysophospholipase activity
PMID: 29239216
2
LYPLA1 depalmitoylates SQSTM1/p62, negatively regulating autophagy by decreasing SQSTM1-phagophore membrane affinity
PMID: 38124295
3
LYPLA1 depalmitoylates GPCPD1 under hypoxic conditions, facilitating mitochondrial localization and mitophagy
PMID: 36803235
4
LYPLA1 is regulated by testosterone via miR-125a-5p pathway and affects global protein palmitoylation levels
PMID: 33284463
5
LYPLA1 overexpression promotes proliferation and migration in non-small cell lung cancer cells
PMID: 30431103
6
LYPLA1 cooperates with LYPLA2 to maintain cellular lipid homeostasis
PMID: 30482805
Disease Associationsⓘ20
ovarian neoplasmOpen Targets
0.29Weak
PhlebitisOpen Targets
0.28Weak
obesityOpen Targets
0.27Weak
ThrombophlebitisOpen Targets
0.27Weak
melanomaOpen Targets
0.09Suggestive
neoplasmOpen Targets
0.07Suggestive
cystOpen Targets
0.07Suggestive
atherosclerosisOpen Targets
0.07Suggestive
body weight gainOpen Targets
0.05Suggestive
cardiac arrhythmiaOpen Targets
0.05Suggestive
acute myeloid leukemiaOpen Targets
0.05Suggestive
Huntington diseaseOpen Targets
0.04Suggestive
thyroid neoplasmOpen Targets
0.04Suggestive
hyperinsulinism due to INSR deficiencyOpen Targets
0.04Suggestive
non-small cell lung carcinomaOpen Targets
0.04Suggestive
Combined hyperlipidemiaOpen Targets
0.04Suggestive
renal fibrosisOpen Targets
0.03Suggestive
hyperinsulinism due to glucokinase deficiencyOpen Targets
0.03Suggestive
chylomicron retention diseaseOpen Targets
0.03Suggestive
diarrhea 13Open Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
PNPLA6Protein interaction95%LCATProtein interaction93%PLA2G4AProtein interaction93%PLA2G10Protein interaction93%LPCAT3Protein interaction93%PLA2G15Protein interaction93%
Tissue Expression6 tissues
Liver
100%
Heart
89%
Bone Marrow
54%
Brain
47%
Lung
43%
Ovary
19%
Gene Interaction Network
Click a node to explore
LYPLA1PNPLA6LCATPLA2G4APLA2G10LPCAT3PLA2G15
PROTEIN STRUCTURE
Preparing viewer…
PDB1FJ2 · 1.50 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.56LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.88 [0.51–1.56]
RankingsWhere LYPLA1 stands among ~20K protein-coding genes
  • #7,573of 20,598
    Most Researched61
  • #15,479of 17,882
    Most Constrained (LOEUF)1.56
Genes detectedLYPLA1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Hypoxia-induced GPCPD1 depalmitoylation triggers mitophagy via regulating PRKN-mediated ubiquitination of VDAC1.
PMID: 36803235
Autophagy · 2023
1.00
2
Protein depalmitoylases.
PMID: 29239216
Crit Rev Biochem Mol Biol · 2018
0.90
3
A defective lysophosphatidic acid-autophagy axis increases miscarriage risk by restricting decidual macrophage residence.
PMID: 35220880
Autophagy · 2022
0.80
4
PMID: 38124295
Autophagy · 2024
0.70
5
Androgen-dependent miR-125a-5p targets LYPLA1 and regulates global protein palmitoylation level in late-onset hypogonadism males.
PMID: 33284463
J Cell Physiol · 2021
0.60