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25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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MAP1LC3A
microtubule associated protein 1 light chain 3 alpha
Chromosome 20 · 20q11.22
NCBI Gene: 84557Ensembl: ENSG00000101460.14HGNC: HGNC:6838UniProt: Q9H492
395PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
RESEARCH IMPACT
Highly StudiedTrending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
autophagy of mitochondrionprotein bindingcytosolubiquitin protein ligase bindingmelanomacancerIrritabilityThromboembolism
✦AI Summary

MAP1LC3A (LC3) is a ubiquitin-like protein essential for autophagosome formation and maturation. During macroautophagy, LC3 is lipidated and conjugated to phagophore membranes, where it serves as a membrane scaffold 1. LC3 functions in the early elongation stages of autophagosome formation, while the related GABARAP/GATE-16 subfamily handles later maturation steps [UniProt]. Through LC3-interacting region (LIR) motifs, cargo receptors bind lipidated LC3 to enable selective autophagy of specific substrates including mitochondria, protein aggregates, and endoplasmic reticulum subdomains 23. Beyond canonical autophagy, LC3 participates in LC3-associated phagocytosis (LAP), a non-canonical pathway where LC3 conjugates to phagosome membranes following pathogen or dying cell recognition, contributing to immune regulation and inflammatory responses 4. LC3 lipidation is tightly regulated—ATG7 acetylation suppresses LC3 conjugation, while deacetylation drives both macroautophagy and LC3-associated microautophagy in response to cellular stress 5. LC3 conversion (LC3-I to LC3-II) serves as a widely-used autophagy marker, though careful interpretation is required as LC3-II itself undergoes lysosomal degradation 6. Given autophagy's dual role in cancer—simultaneously supporting tumor cell survival and enabling therapeutic cell elimination—LC3-targeting approaches remain therapeutically relevant 7.

Sources cited
1
LC3 is conjugated to phagophore membranes and is a core component of autophagy machinery
PMID: 21175768
2
LC3-interacting region (LIR) motifs enable cargo receptors to interact with LC3 for selective autophagy
PMID: 23908376
3
LIR-LDS interactions mediate selective autophagy receptor binding to LC3 family proteins
PMID: 31310766
4
LC3 participates in LC3-associated phagocytosis (LAP) for immune regulation and inflammatory responses
PMID: 30787029
5
ATG7 acetylation regulates LC3 lipidation to control macroautophagy and LC3-associated microautophagy
PMID: 37999993
6
LC3-I to LC3-II conversion correlates with autophagosome number and serves as autophagy marker
PMID: 17611390
7
Autophagy has context-dependent roles in cancer with therapeutic targeting implications
PMID: 28751651
Disease Associationsⓘ20
melanomaOpen Targets
0.33Weak
cancerOpen Targets
0.28Weak
IrritabilityOpen Targets
0.27Weak
ThromboembolismOpen Targets
0.23Weak
non-melanoma skin carcinomaOpen Targets
0.22Weak
seborrheic dermatitisOpen Targets
0.22Weak
erythematosquamous dermatosisOpen Targets
0.22Weak
health study participationOpen Targets
0.21Weak
cutaneous melanomaOpen Targets
0.20Weak
KeloidOpen Targets
0.19Weak
basal cell carcinomaOpen Targets
0.18Weak
bipolar disorderOpen Targets
0.18Weak
hair colorOpen Targets
0.16Weak
examination for neoplasmOpen Targets
0.16Weak
osteoarthritis, kneeOpen Targets
0.15Weak
skin cancerOpen Targets
0.15Weak
neoplasmOpen Targets
0.14Weak
PhlebitisOpen Targets
0.13Weak
ThrombophlebitisOpen Targets
0.13Weak
deep vein thrombosisOpen Targets
0.12Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
PIKFYVEProtein interaction100%ATG4AProtein interaction100%ATG4DProtein interaction99%ATG4CProtein interaction99%PIK3C3Protein interaction99%FUNDC1Protein interaction99%
Tissue Expression6 tissues
Brain
100%
Liver
74%
Ovary
66%
Heart
65%
Lung
48%
Bone Marrow
42%
Gene Interaction Network
Click a node to explore
MAP1LC3APIKFYVEATG4AATG4DATG4CPIK3C3FUNDC1
PROTEIN STRUCTURE
Preparing viewer…
PDB7RA0 · 1.36 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.29LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.76 [0.47–1.29]
RankingsWhere MAP1LC3A stands among ~20K protein-coding genes
  • #747of 20,598
    Most Researched395 · top 5%
  • #13,610of 17,882
    Most Constrained (LOEUF)1.29
Genes detectedMAP1LC3A
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
How to interpret LC3 immunoblotting.
PMID: 17611390
Autophagy · 2007
1.00
2
LC3-associated phagocytosis at a glance.
PMID: 30787029
J Cell Sci · 2019
0.90
3
Targeting autophagy in cancer.
PMID: 28751651
Nat Rev Cancer · 2017
0.80
4
MAP4K2 connects the Hippo pathway to autophagy in response to energy stress.
PMID: 37937799
Autophagy · 2024
0.72
5
The LIR motif - crucial for selective autophagy.
PMID: 23908376
J Cell Sci · 2013
0.70