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GeneE
25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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PIK3C3
phosphatidylinositol 3-kinase catalytic subunit type 3
Chromosome 18 · 18q12.3
NCBI Gene: 5289Ensembl: ENSG00000078142.14HGNC: HGNC:8974UniProt: A8MYT4
267PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub GeneKinase
RESEARCH IMPACT
Trending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingphosphatidylinositol kinase activityhost-mediated activation of viral genome replicationearly endosome to late endosome transportneurodegenerative diseaseCOVID-19alcohol drinkingobesity
✦AI Summary

PIK3C3 encodes a class III phosphatidylinositol 3-kinase that serves as a critical regulator of autophagy and endosomal trafficking. The enzyme functions as the catalytic subunit of the BECN1-PIK3C3 complex, where it generates phosphatidylinositol-3-phosphate (PtdIns3P) on autophagosome and endosomal membranes 12. PIK3C3 is essential for autophagosome formation and maturation, working downstream of AMPK activation and ULK1 complex signaling 1. The kinase activity can be regulated by post-translational modifications, including acetylation, which modulates autophagy initiation 3. PIK3C3 plays crucial roles in selective autophagy pathways, including lipophagy for lipid droplet degradation in liver metabolism and mitophagy for mitochondrial quality control 45. The enzyme is also involved in endometrial tissue homeostasis and cancer progression 6. Dysregulation of PIK3C3-mediated autophagy is implicated in various diseases including fatty liver disease, neurodegenerative disorders, and autoimmune conditions 45. Additionally, PIK3C3 kinase activity is required for SARS-CoV-2 replication, highlighting its role in viral pathogenesis. The enzyme represents an attractive therapeutic target for autophagy modulation in cancer and metabolic diseases 2.

Sources cited
1
PIK3C3 is part of the BECN1-PIK3C3 complex and is regulated by acetylation
PMID: 35435793
2
PIK3C3 functions downstream of AMPK in autophagy regulation
PMID: 31776981
3
PIK3C3 is a key kinase in autophagy machinery and therapeutic target
PMID: 26658914
4
PIK3C3 is involved in lipophagy and liver metabolism
PMID: 33794741
5
PIK3C3 plays a role in mitophagy and immune regulation
PMID: 30951392
6
PIK3C3 functions in endometrial tissue homeostasis and cancer
PMID: 32401642
7
PIK3C3 is subject to transcriptional regulation by STAT3 signaling
PMID: 25951043
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.54Moderate
COVID-19Open Targets
0.47Moderate
alcohol drinkingOpen Targets
0.44Moderate
obesityOpen Targets
0.38Weak
dengue diseaseOpen Targets
0.37Weak
severe acute respiratory syndromeOpen Targets
0.37Weak
male reproductive organ cancerOpen Targets
0.32Weak
major depressive disorderOpen Targets
0.30Weak
poisoningOpen Targets
0.30Weak
asthmaOpen Targets
0.30Weak
congenital anomaly of cardiovascular systemOpen Targets
0.28Weak
skin diseaseOpen Targets
0.28Weak
attention deficit hyperactivity disorderOpen Targets
0.28Weak
smoking initiationOpen Targets
0.27Weak
Abnormal pupillary functionOpen Targets
0.27Weak
type 2 diabetes mellitusOpen Targets
0.26Weak
mathematical abilityOpen Targets
0.26Weak
bone remodeling diseaseOpen Targets
0.25Weak
diabetes mellitusOpen Targets
0.21Weak
schizophreniaOpen Targets
0.21Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ULK2Protein interaction100%ULK1Protein interaction100%ATG16L1Protein interaction100%NRBF2Protein interaction100%ATG101Protein interaction100%ATG13Protein interaction100%
Tissue Expression6 tissues
Brain
100%
Ovary
58%
Heart
57%
Bone Marrow
55%
Lung
47%
Liver
36%
Gene Interaction Network
Click a node to explore
PIK3C3ULK2ULK1ATG16L1NRBF2ATG101ATG13
PROTEIN STRUCTURE
Preparing viewer…
PDB6HOG · 1.26 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.00LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.77 [0.59–1.00]
RankingsWhere PIK3C3 stands among ~20K protein-coding genes
  • #1,402of 20,598
    Most Researched267 · top 10%
  • #9,703of 17,882
    Most Constrained (LOEUF)1.00
Genes detectedPIK3C3
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
Acetylation in the regulation of autophagy.
PMID: 35435793
Autophagy · 2023
1.00
2
Copper metabolism in cell death and autophagy.
PMID: 37055935
Autophagy · 2023
0.90
3
AMPK and Autophagy.
PMID: 31776981
Adv Exp Med Biol · 2019
0.80
4
Autophagy inhibitors.
PMID: 26658914
Cell Mol Life Sci · 2016
0.70
5
VCP/p97 UFMylation stabilizes BECN1 and facilitates the initiation of autophagy.
PMID: 38762759
Autophagy · 2024
0.64