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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
MED13
mediator complex subunit 13
Chromosome 17 Β· 17q23.2
NCBI Gene: 9969Ensembl: ENSG00000108510.11HGNC: HGNC:22474UniProt: Q9UHV7
88PubMed Papers
21Diseases
0Drugs
66Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedTranscription Factor
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingnucleoplasmmembranemediator complexintellectual developmental disorder 61genetic disorderisolated growth hormone deficiency type IINon-acquired isolated growth hormone deficiency
✦AI Summary

MED13 (mediator complex subunit 13) is a critical component of the Mediator complex kinase module that regulates RNA polymerase II-dependent transcription 1. The protein functions as part of the CDK8 kinase module (CKM), which reversibly associates with the core Mediator complex to modulate transcriptional activity 2. Structurally, MED13 contains a large intrinsically disordered region (IDR) that directly occludes RNA polymerase II/MED26 binding sites, leading to transcriptional repression when the kinase module is bound 2. Beyond its nuclear transcriptional role, MED13 has secondary cytoplasmic functions in stress response, where it translocates to promote processing body assembly and autophagy for cellular survival 3. Disease relevance is significant, as de novo mutations in MED13 cause intellectual developmental disorder, autosomal dominant 61, characterized by developmental delays, speech disorders, autism spectrum features, and various dysmorphisms 1. Mutations cluster in functionally important regions affecting protein ubiquitination and degradation 1. Additionally, MED13 serves as a genetic modifier in neurodegenerative diseases, particularly Ξ±-synuclein-associated neurodegeneration in Parkinson's disease, where it interacts with glycolytic pathways to provide neuroprotection 4. The gene also shows frameshift mutations in microsatellite-unstable gastric and colorectal cancers 5.

Sources cited
1
MED13 is a component of the CDK8 kinase module and de novo mutations cause intellectual disability with developmental delays
PMID: 29740699
2
MED13 IDR occludes RNA polymerase II binding sites leading to transcriptional repression
PMID: 39321804
3
MED13 has secondary cytoplasmic roles in stress response, promoting P-body assembly and autophagy
PMID: 40358161
4
MED13 is a genetic modifier of Ξ±-synuclein neurodegeneration and interacts with glycolytic pathways
PMID: 36543134
5
MED13 shows frameshift mutations in microsatellite-unstable gastric and colorectal cancers
PMID: 27129500
Disease Associationsβ“˜21
intellectual developmental disorder 61Open Targets
0.75Strong
genetic disorderOpen Targets
0.53Moderate
isolated growth hormone deficiency type IIOpen Targets
0.46Moderate
Non-acquired isolated growth hormone deficiencyOpen Targets
0.46Moderate
neurodegenerative diseaseOpen Targets
0.46Moderate
complex neurodevelopmental disorderOpen Targets
0.46Moderate
Neurodevelopmental disorderOpen Targets
0.45Moderate
Autistic behaviorOpen Targets
0.40Weak
Intellectual disabilityOpen Targets
0.37Weak
Motor delayOpen Targets
0.37Weak
attention deficit hyperactivity disorderOpen Targets
0.37Weak
Abnormality of the eyeOpen Targets
0.37Weak
ConstipationOpen Targets
0.37Weak
constipation disorderOpen Targets
0.37Weak
Delayed speech and language developmentOpen Targets
0.37Weak
systemic lupus erythematosusOpen Targets
0.34Weak
alcohol drinkingOpen Targets
0.34Weak
mathematical abilityOpen Targets
0.33Weak
device complicationOpen Targets
0.33Weak
Parkinson diseaseOpen Targets
0.29Weak
Intellectual developmental disorder, autosomal dominant 61UniProt
Pathogenic Variants66
NM_005121.3(MED13):c.5683_5684del (p.Met1895fs)Pathogenic
Intellectual developmental disorder 61|See cases|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 1895
NM_005121.3(MED13):c.5002C>T (p.Arg1668Ter)Pathogenic
Inborn genetic diseases|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 1668
NM_005121.3(MED13):c.722_726del (p.Pro241fs)Pathogenic
Inborn genetic diseases|Intellectual developmental disorder 61
β˜…β˜…β˜†β˜†2024β†’ Residue 241
NM_005121.3(MED13):c.2501A>G (p.Tyr834Cys)Pathogenic
not provided|Intellectual developmental disorder 61
β˜…β˜…β˜†β˜†2024β†’ Residue 834
NM_005121.3(MED13):c.2503C>T (p.Pro835Ser)Pathogenic
not provided|Intellectual developmental disorder 61
β˜…β˜…β˜†β˜†2022β†’ Residue 835
NM_005121.3(MED13):c.5065-8C>GLikely pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2025
NM_005121.3(MED13):c.1856dup (p.Phe620fs)Pathogenic
Intellectual developmental disorder 61
β˜…β˜†β˜†β˜†2025β†’ Residue 620
NM_005121.3(MED13):c.2175dup (p.His726fs)Pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2025β†’ Residue 726
NM_005121.3(MED13):c.2264-2A>GLikely pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2025
NM_005121.3(MED13):c.5393A>G (p.His1798Arg)Likely pathogenic
Intellectual developmental disorder 61
β˜…β˜†β˜†β˜†2025β†’ Residue 1798
NM_005121.3(MED13):c.977C>A (p.Thr326Lys)Likely pathogenic
Intellectual developmental disorder 61
β˜…β˜†β˜†β˜†2025β†’ Residue 326
NM_005121.3(MED13):c.2139dup (p.Asp714fs)Likely pathogenic
MED13-related neurodevelopmental disorder
β˜…β˜†β˜†β˜†2025β†’ Residue 714
NM_005121.3(MED13):c.2507C>T (p.Thr836Ile)Likely pathogenic
MED13-associated disorder
β˜…β˜†β˜†β˜†2025β†’ Residue 836
NM_005121.3(MED13):c.1987_1999del (p.Lys663fs)Pathogenic
Intellectual developmental disorder 61
β˜…β˜†β˜†β˜†2025β†’ Residue 663
NM_005121.3(MED13):c.3465_3466del (p.Cys1155fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 1155
NM_005121.3(MED13):c.2489T>G (p.Leu830Arg)Pathogenic
Intellectual developmental disorder 61
β˜…β˜†β˜†β˜†2024β†’ Residue 830
NM_005121.3(MED13):c.977C>T (p.Thr326Ile)Likely pathogenic
Intellectual developmental disorder 61|not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 326
NM_005121.3(MED13):c.2263+2T>CPathogenic
not provided
β˜…β˜†β˜†β˜†2024
NM_005121.3(MED13):c.1048del (p.Ser350fs)Likely pathogenic
Intellectual developmental disorder 61
β˜…β˜†β˜†β˜†2024β†’ Residue 350
NM_005121.3(MED13):c.3644G>T (p.Gly1215Val)Likely pathogenic
Intellectual developmental disorder 61
β˜…β˜†β˜†β˜†2024β†’ Residue 1215
View on ClinVar β†—
Related Genes
TRIP4Protein interaction100%MED10Protein interaction100%MED28Protein interaction100%MED18Protein interaction100%MED9Protein interaction100%MED15Protein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
72%
Lung
62%
Heart
57%
Liver
54%
Ovary
54%
Gene Interaction Network
Click a node to explore
MED13TRIP4MED10MED28MED18MED9MED15
PROTEIN STRUCTURE
Preparing viewer…
PDB8TRH Β· 3.70 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.13Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.09 [0.06–0.13]
RankingsWhere MED13 stands among ~20K protein-coding genes
  • #5,420of 20,598
    Most Researched88
  • #1,101of 5,498
    Most Pathogenic Variants66 Β· top quartile
  • #139of 17,882
    Most Constrained (LOEUF)0.13 Β· top 1%
Genes detectedMED13
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Penetrance, variable expressivity and monogenic neurodevelopmental disorders.
PMID: 38453051
Eur J Med Genet Β· 2024
1.00
2
Structural basis of the human transcriptional Mediator regulated by its dissociable kinase module.
PMID: 39321804
Mol Cell Β· 2024
0.90
3
De novo mutations in MED13, a component of the Mediator complex, are associated with a novel neurodevelopmental disorder.
PMID: 29740699
Hum Genet Β· 2018
0.80
4
De Novo Variants in CNOT1, a Central Component of the CCR4-NOT Complex Involved in Gene Expression and RNA and Protein Stability, Cause Neurodevelopmental Delay.
PMID: 32553196
Am J Hum Genet Β· 2020
0.70
5
Variants in MED12L, encoding a subunit of the mediator kinase module, are responsible for intellectual disability associated with transcriptional defect.
PMID: 31155615
Genet Med Β· 2019
0.60