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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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METTL1
methyltransferase 1, tRNA methylguanosine
Chromosome 12 · 12q14.1
NCBI Gene: 4234Ensembl: ENSG00000037897.18HGNC: HGNC:7030UniProt: Q9UBP6
66PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
tRNA (m7G46) methyltransferase complexprotein bindingtRNA (guanine(46)-N7)-methyltransferase activityinternal mRNA (guanine-N7-)-methyltransferase activityneurodegenerative diseaseneoplasmAbnormality of neuronal migrationcancer
✦AI Summary

METTL1 is the catalytic component of the METTL1-WDR4 methyltransferase complex that generates N7-methylguanosine (m7G) modifications in various RNA species 1. The complex primarily catalyzes m7G46 formation in tRNAs containing the 5'-RAGGU-3' motif within the variable loop, which stabilizes tRNA tertiary structure and protects against degradation 12. Structurally, WDR4 serves as a scaffold while METTL1's N-terminal region forms part of the catalytic pocket, with methyltransferase activity regulated by S27 phosphorylation 2. Beyond tRNAs, METTL1 methylates specific microRNAs like let-7, promoting their processing by disrupting inhibitory secondary structures in pri-miRNAs 3. The enzyme also modifies circRNAs, preventing their degradation and affecting downstream signaling pathways 4. METTL1 dysregulation has significant disease implications, being frequently amplified in cancers where it drives oncogenic transformation through enhanced translation of growth-promoting proteins 5. It promotes lenvatinib resistance in hepatocellular carcinoma by upregulating EGFR pathway genes 6 and contributes to cardiac hypertrophy by regulating SRSF9-mediated splicing 7. These diverse functions position METTL1 as a promising therapeutic target across multiple pathological conditions.

Sources cited
1
METTL1-WDR4 complex generates m7G modifications and catalyzes m7G46 formation in tRNAs with 5'-RAGGU-3' motif
PMID: 36599982
2
WDR4 serves as scaffold, METTL1 N-terminal region is part of catalytic pocket, and activity is regulated by S27 phosphorylation
PMID: 36599985
3
METTL1 methylates let-7 miRNA, promoting processing by disrupting inhibitory secondary structures in pri-miRNAs
PMID: 31031083
4
METTL1 modifies circRNAs preventing their degradation and affecting downstream signaling
PMID: 39215345
5
METTL1 is frequently amplified in cancers and drives oncogenic transformation through enhanced translation
PMID: 34352207
6
METTL1 promotes lenvatinib resistance in hepatocellular carcinoma by upregulating EGFR pathway genes
PMID: 36102722
7
METTL1 contributes to cardiac hypertrophy by regulating SRSF9-mediated splicing
PMID: 38810124
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.39Weak
neoplasmOpen Targets
0.11Weak
Abnormality of neuronal migrationOpen Targets
0.11Weak
cancerOpen Targets
0.11Weak
hepatocellular carcinomaOpen Targets
0.11Weak
colorectal carcinomaOpen Targets
0.10Weak
lung adenocarcinomaOpen Targets
0.10Suggestive
breast cancerOpen Targets
0.10Suggestive
head and neck squamous cell carcinomaOpen Targets
0.09Suggestive
systemic lupus erythematosusOpen Targets
0.09Suggestive
acute myeloid leukemiaOpen Targets
0.08Suggestive
gliomaOpen Targets
0.08Suggestive
posterior cortical atrophyOpen Targets
0.08Suggestive
prostate cancerOpen Targets
0.08Suggestive
esophageal squamous cell carcinomaOpen Targets
0.08Suggestive
papillary thyroid carcinomaOpen Targets
0.08Suggestive
Abnormality of the skeletal systemOpen Targets
0.08Suggestive
cardiac hypertrophyOpen Targets
0.07Suggestive
multiple sclerosisOpen Targets
0.07Suggestive
gastric cancerOpen Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TRMT61BProtein interaction100%BUD23Protein interaction99%TRMT10CProtein interaction96%TRMT6Protein interaction95%TRMT112Protein interaction93%RRS1Protein interaction93%
Tissue Expression6 tissues
Liver
100%
Ovary
78%
Bone Marrow
72%
Lung
62%
Heart
40%
Brain
21%
Gene Interaction Network
Click a node to explore
METTL1TRMT61BBUD23TRMT10CTRMT6TRMT112RRS1
PROTEIN STRUCTURE
Preparing viewer…
PDB3CKK · 1.55 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.79LoF Tolerant
pLIⓘ
0.01Tolerant
Observed/Expected LoF0.51 [0.34–0.79]
RankingsWhere METTL1 stands among ~20K protein-coding genes
  • #7,088of 20,598
    Most Researched66
  • #6,464of 17,882
    Most Constrained (LOEUF)0.79
Genes detectedMETTL1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
METTL1-Mediated m7G tRNA Modification Promotes Lenvatinib Resistance in Hepatocellular Carcinoma.
PMID: 36102722
Cancer Res · 2023
1.00
2
METTL1-mediated m
PMID: 34352207
Mol Cell · 2021
0.90
3
The m7G Methyltransferase Mettl1 Drives Cardiac Hypertrophy by Regulating SRSF9-Mediated Splicing of NFATc4.
PMID: 38810124
Adv Sci (Weinh) · 2024
0.80
4
Structures and mechanisms of tRNA methylation by METTL1-WDR4.
PMID: 36599982
Nature · 2023
0.70
5
Methyltransferase-like proteins in cancer biology and potential therapeutic targeting.
PMID: 37533128
J Hematol Oncol · 2023
0.60