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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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BUD23
BUD23 rRNA methyltransferase and ribosome maturation factor
Chromosome 7 · 7q11.23
NCBI Gene: 114049Ensembl: ENSG00000071462.14HGNC: HGNC:16405UniProt: O43709
74PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub GeneTranscription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA bindingprotein bindingpositive regulation of rRNA processingnucleolusMODYmaturity-onset diabetes of the young type 3Werner syndrome3-hydroxy-3-methylglutaryl-CoA synthase deficiency
✦AI Summary

BUD23 is an S-adenosyl-L-methionine-dependent methyltransferase that catalyzes N(7)-methylguanosine modification at position 1575 of 18S rRNA, a modification positioned at a functionally important ridge between the P and E tRNA binding sites 1. BUD23 requires the adapter protein TRM112 for full methyltransferase activity and functions in late-stage 40S ribosomal subunit maturation 1. Beyond its catalytic role, BUD23 promotes critical structural transitions in small subunit biogenesis, including central pseudoknot formation, independent of its methylation activity 2. Mechanistically, BUD23 selectively promotes ribosomal interaction with low GC-content 5'UTRs, facilitating efficient translation of specific mRNA transcripts 3. During viral infection, KSHV manipulates BUD23-dependent ribosome biogenesis to generate specialized ribosomes that preferentially translate viral transcripts by reducing ribosome association with upstream open reading frames 4. Clinically, BUD23 overexpression correlates with aggressive malignancies. In hepatocellular carcinoma and kidney renal clear cell carcinoma, elevated BUD23 expression associates with poor survival and reduced immune cell infiltration 56. In prostate cancer, BUD23 upregulation correlates with advanced pathological stages and nodal metastasis, with BUD23 knockdown inhibiting cell proliferation through PPAR signaling modulation 7. BUD23 emerges as essential for cardiac mitochondrial function and embryonic development 3.

Sources cited
1
BUD23 catalyzes N(7)-methylguanosine at 18S rRNA position 1575 with TRM112; methylation occurs on late 40S precursors; structural role in central pseudoknot formation
PMID: 25489090
2
BUD23 promotes critical transition events in small subunit assembly independent of methylation activity
PMID: 33844044
3
BUD23 selectively promotes ribosomal interaction with low GC-content 5'UTRs; essential for cardiac mitochondrial function and postnatal development
PMID: 31939735
4
KSHV manipulates BUD23-dependent ribosome biogenesis to generate specialized ribosomes; BUD23 required for efficient viral lytic gene translation
PMID: 36653366
5
BUD23 upregulated in hepatocellular carcinoma; negatively correlated with patient survival and immune cell infiltration; silencing BUD23 reverses immunosuppressive microenvironment
PMID: 40038727
6
BUD23 overexpressed in kidney renal clear cell carcinoma; associated with worse overall survival; oncogenic role in KIRC
PMID: 40879514
7
BUD23 elevated in prostate cancer correlating with aggressive features; knockdown inhibits cell proliferation and reduces PPAR protein expression
PMID: 39636451
8
TRM112 activates BUD23 methyltransferase; BUD23-TRM112 complex modifies 18S rRNA and participates in 40S biogenesis pathway
PMID: 28134793
Disease Associationsⓘ20
MODYOpen Targets
0.07Suggestive
maturity-onset diabetes of the young type 3Open Targets
0.05Suggestive
Werner syndromeOpen Targets
0.05Suggestive
3-hydroxy-3-methylglutaryl-CoA synthase deficiencyOpen Targets
0.05Suggestive
hyperproinsulinemiaOpen Targets
0.05Suggestive
maturity-onset diabetes of the young type 10Open Targets
0.05Suggestive
prostate cancerOpen Targets
0.05Suggestive
exercise-induced hyperinsulinismOpen Targets
0.04Suggestive
Glycogen storage disease due to hepatic glycogen synthase deficiencyOpen Targets
0.04Suggestive
glycogen storage disorder due to hepatic glycogen synthase deficiencyOpen Targets
0.04Suggestive
hyperinsulinism due to INSR deficiencyOpen Targets
0.04Suggestive
phosphoenolpyruvate carboxykinase deficiency, mitochondrialOpen Targets
0.03Suggestive
diabetes mellitusOpen Targets
0.03Suggestive
type 2 diabetes mellitusOpen Targets
0.03Suggestive
mathematical abilityOpen Targets
0.02Suggestive
pachyonychia congenitaOpen Targets
0.02Suggestive
neoplasmOpen Targets
0.02Suggestive
hepatocellular carcinomaOpen Targets
0.02Suggestive
cancerOpen Targets
0.01Suggestive
lung adenocarcinomaOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
BYSLProtein interaction100%RPS21Protein interaction100%RPS25Protein interaction100%CSNK1A1Protein interaction99%METTL1Protein interaction99%WDR4Protein interaction99%
Tissue Expression6 tissues
Bone Marrow
100%
Heart
77%
Ovary
72%
Liver
63%
Lung
61%
Brain
39%
Gene Interaction Network
Click a node to explore
BUD23BYSLRPS21RPS25CSNK1A1METTL1WDR4
PROTEIN STRUCTURE
Preparing viewer…
PDB7WTU · 3.00 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.92LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.69 [0.52–0.92]
RankingsWhere BUD23 stands among ~20K protein-coding genes
  • #6,385of 20,598
    Most Researched74
  • #8,380of 17,882
    Most Constrained (LOEUF)0.92
Genes detectedBUD23
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Histidine metabolism drives liver cancer progression via immune microenvironment modulation through metabolic reprogramming.
PMID: 40038727
J Transl Med · 2025
1.00
2
Overexpression of m
PMID: 40879514
J Pathol · 2025
0.90
3
Genetics animates structure: leveraging genetic interactions to study the dynamics of ribosome biogenesis.
PMID: 33844044
Curr Genet · 2021
0.80
4
Cardiac mitochondrial function depends on BUD23 mediated ribosome programming.
PMID: 31939735
Elife · 2020
0.70
5
Kaposi's sarcoma-associated herpesvirus induces specialised ribosomes to efficiently translate viral lytic mRNAs.
PMID: 36653366
Nat Commun · 2023
0.60