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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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YBEY
ybeY metalloendoribonuclease
Chromosome 21 · 21q22.3
NCBI Gene: 54059Ensembl: ENSG00000182362.15HGNC: HGNC:1299UniProt: P58557
28PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleusmitochondrionprotein bindingRNA endonuclease activityneurodegenerative diseaseTesticular Germ Cell Tumortesticular carcinomabreast cancer
✦AI Summary

YBEY encodes a highly conserved single strand-specific metalloendoribonuclease that plays critical roles in ribosome biogenesis and RNA processing across diverse biological systems 1. The protein functions primarily in rRNA maturation, particularly processing the 3' end of 16S rRNA and facilitating small ribosomal subunit assembly in association with ribosomal protein uS11 and assembly GTPase Era 1. In human mitochondria, YbeY performs dual functions in precursor RNA processing and mitoribosome biogenesis, with loss of function leading to severe reduction in mitochondrial translation and cell viability 2. The enzyme also regulates small RNA networks, directly degrading regulatory RNAs such as ReaL in Pseudomonas aeruginosa to control downstream gene expression 3. YbeY demonstrates significant disease relevance, with knockdown in breast cancer cell lines decreasing proliferation, colony formation, and migration regardless of estrogen receptor status 4. In pathogenic bacteria, YbeY deletion severely compromises virulence, growth rate, and stress resistance while disrupting secretion systems and biofilm formation 567. Clinical significance is emerging, as genetic variants near YBEY associate with breast cancer risk through altered gene expression 4, and the gene shows interaction effects in sleep apnea genome-wide association studies 8.

Sources cited
1
YbeY is ultraconserved and critical for ribosome biogenesis, working with uS11 and Era in small subunit assembly
PMID: 33929506
2
YbeY performs dual functions in mitochondrial RNA processing and ribosome biogenesis, essential for cell viability
PMID: 34037799
3
YbeY directly degrades regulatory RNA ReaL and is required for rRNA processing and bacterial virulence
PMID: 32605982
4
YBEY knockdown decreases breast cancer cell proliferation and migration; genetic variants associate with breast cancer risk
PMID: 33922500
5
YbeY deletion compromises bacterial growth and enhances virulence gene expression in Yersinia
PMID: 25416689
6
YbeY deletion leads to morphological defects and virulence attenuation in Brucella
PMID: 29632093
7
YbeY controls secretion systems and biofilm formation through regulatory RNA networks
PMID: 33310711
8
YBEY shows genetic interaction effects in sleep apnea genome-wide association studies
PMID: 40736211
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.35Weak
Testicular Germ Cell TumorOpen Targets
0.15Weak
testicular carcinomaOpen Targets
0.12Weak
breast cancerOpen Targets
0.04Suggestive
PainOpen Targets
0.04Suggestive
obesityOpen Targets
0.03Suggestive
overnutritionOpen Targets
0.03Suggestive
type 2 diabetes mellitusOpen Targets
0.03Suggestive
premature birthOpen Targets
0.02Suggestive
mental or behavioural disorderOpen Targets
0.02Suggestive
infectionOpen Targets
0.01Suggestive
pneumoniaOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
cancerOpen Targets
0.01Suggestive
endometrioid carcinomaOpen Targets
0.01Suggestive
sleep apneaOpen Targets
0.00Suggestive
fungal infectious diseaseOpen Targets
0.00Suggestive
metastatic neoplasmOpen Targets
0.00Suggestive
Vibrio infectious diseaseOpen Targets
0.00Suggestive
hereditary breast carcinomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
DDX10Shared pathway100%PIN4Shared pathway100%RRP1Shared pathway100%UTP14CShared pathway100%ESF1Shared pathway100%DDX27Shared pathway100%
Tissue Expression6 tissues
Brain
100%
Liver
89%
Heart
88%
Ovary
75%
Lung
46%
Bone Marrow
36%
Gene Interaction Network
Click a node to explore
YBEYDDX10PIN4RRP1UTP14CESF1DDX27
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt P58557
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.66LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.06 [0.69–1.66]
RankingsWhere YBEY stands among ~20K protein-coding genes
  • #12,482of 20,598
    Most Researched28
  • #15,943of 17,882
    Most Constrained (LOEUF)1.66
Genes detectedYBEY
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
YbeY, éminence grise of ribosome biogenesis.
PMID: 33929506
Biochem Soc Trans · 2021
1.00
2
Functional Genomic Analyses of the 21q22.3 Locus Identifying Functional Variants and Candidate Gene
PMID: 33922500
Cancers (Basel) · 2021
0.90
3
Endoribonuclease YbeY Is Essential for RNA Processing and Virulence in Pseudomonas aeruginosa.
PMID: 32605982
mBio · 2020
0.80
4
YbeY is required for ribosome small subunit assembly and tRNA processing in human mitochondria.
PMID: 34037799
Nucleic Acids Res · 2021
0.70
5
Absence of YbeY RNase compromises the growth and enhances the virulence plasmid gene expression of Yersinia enterocolitica O:3.
PMID: 25416689
Microbiology (Reading) · 2015
0.60