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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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MGAT5B
alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B
Chromosome 17 · 17q25.2
NCBI Gene: 146664Ensembl: ENSG00000167889.14HGNC: HGNC:24140UniProt: Q3V5L5
43PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingalpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activitymanganese ion bindingprotein O-linked glycosylationHirsutismplacental retentionNephropathynephritis
✦AI Summary

MGAT5B encodes a glycosyltransferase that catalyzes the transfer of N-acetylglucosamine (GlcNAc) to mannose residues in both N-glycans and O-mannosyl glycans, creating β(1,6)-branched oligosaccharide structures 1. The enzyme acts on the core structure of N-glycans by adding GlcNAc to β1-6 linkage positions on both α1,3- and α1,6-linked mannose arms, and also modifies brain O-mannosyl glycans to form 2,6-branched structures 1. MGAT5B plays a crucial role in regulating integrin and laminin-dependent neuronal cell adhesion and migration through its O-mannosyl glycan pathway activity. The enzyme is significantly upregulated in metastatic prostate cancer, where its β(1,6)-branched oligosaccharide products serve as markers of tumor progression and correlate with poor disease-free survival 2. MGAT5B expression has been identified as a predictive biomarker in various cancers, including hepatocellular carcinoma metastasis 3 and non-small cell lung cancer, where baseline expression predicts pathological response to neoadjuvant chemo-immunotherapy and associates with shorter survival 4. The gene is also implicated in heart failure 5 and Moyamoya disease 6, highlighting its broader role in pathological processes beyond cancer.

Sources cited
1
MGAT5B is an N-glycan branching enzyme that generates structural variation in N-glycans
PMID: 38879010
2
MGAT5B is upregulated in metastatic prostate cancer and its products correlate with poor survival
PMID: 22261809
3
MGAT5B is associated with hepatocellular carcinoma metastasis
PMID: 25232831
4
MGAT5B expression predicts pathological response and survival in lung cancer patients
PMID: 41088357
5
MGAT5B is implicated in heart failure
PMID: 40903443
6
MGAT5B is involved in Moyamoya disease and immune regulation
PMID: 40416061
Disease Associationsⓘ20
HirsutismOpen Targets
0.28Weak
placental retentionOpen Targets
0.27Weak
nephritisOpen Targets
0.25Weak
NephropathyOpen Targets
0.25Weak
viral eye infectionOpen Targets
0.22Weak
hypotensionOpen Targets
0.21Weak
ShockOpen Targets
0.14Weak
AscitesOpen Targets
0.13Weak
Precordial painOpen Targets
0.12Weak
Abnormal erythrocyte morphologyOpen Targets
0.10Suggestive
gliomaOpen Targets
0.07Suggestive
AlkalosisOpen Targets
0.05Suggestive
exostosisOpen Targets
0.05Suggestive
Herpetic encephalitisOpen Targets
0.04Suggestive
combined immunodeficiency due to CTPS1 deficiencyOpen Targets
0.04Suggestive
Autosomal dominant intermediate Charcot-Marie-Tooth disease type BOpen Targets
0.04Suggestive
Charcot-Marie-Tooth disease dominant intermediate BOpen Targets
0.04Suggestive
immunodeficiency 18Open Targets
0.04Suggestive
agammaglobulinemia 10, autosomal dominantOpen Targets
0.04Suggestive
immunodeficiency 62Open Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
MGAT3Protein interaction99%MGAT5Protein interaction99%MGAT4BProtein interaction99%MGAT4AProtein interaction99%POMGNT1Protein interaction99%B4GALT1Protein interaction94%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
12%
Ovary
3%
Lung
2%
Heart
2%
Liver
0%
Gene Interaction Network
Click a node to explore
MGAT5BMGAT3MGAT5MGAT4BMGAT4APOMGNT1B4GALT1
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q3V5L5
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.71LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.57 [0.46–0.71]
RankingsWhere MGAT5B stands among ~20K protein-coding genes
  • #9,756of 20,598
    Most Researched43
  • #5,495of 17,882
    Most Constrained (LOEUF)0.71
Genes detectedMGAT5B
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Regulation of intracellular activity of N-glycan branching enzymes in mammals.
PMID: 38879010
J Biol Chem · 2024
1.00
2
Human prostate cancer in a clinically relevant xenograft mouse model: identification of β(1,6)-branched oligosaccharides as a marker of tumor progression.
PMID: 22261809
Clin Cancer Res · 2012
0.90
3
Pathological discrimination between luteinized thecoma associated with sclerosing peritonitis and thecoma.
PMID: 37335673
Medicine (Baltimore) · 2023
0.80
4
Pathogenic glycosyltransferase genes and potential therapeutic drugs in pressure overload-induced heart failure.
PMID: 40903443
ESC Heart Fail · 2025
0.70
5
Integrative Machine Learning Approach to Explore Glycosylation Signatures and Immune Landscape in Moyamoya Disease.
PMID: 40416061
Bioinform Biol Insights · 2025
0.60