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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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MR1
major histocompatibility complex, class I-related
Chromosome 1 · 1q25.3
NCBI Gene: 3140Ensembl: ENSG00000153029.16HGNC: HGNC:4975UniProt: A0A8C8PVM5
75PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingbeta-2-microglobulin bindingpositive regulation of T cell mediated cytotoxicity directed against tumor cell targetantigen processing and presentation of exogenous antigenImmunodeficiencyalcohol drinkingneoplasmcancer
✦AI Summary

MR1 (major histocompatibility complex, class I-related) is a non-classical MHC class I-like molecule that presents small molecule antigens to specialized T cell populations, particularly mucosal-associated invariant T (MAIT) cells 1. Unlike classical MHC molecules that present peptides, MR1 binds and presents vitamin metabolites, specifically riboflavin (vitamin B2) and folic acid (vitamin B9) derivatives derived from microbial biosynthetic pathways 2. The structure of MR1's antigen-binding cleft is distinct from MHC and CD1 families, being ideally suited to sequester vitamin metabolites such as 6-formyl pterin 2. MR1 is highly conserved across mammals and exhibits limited surface expression, instead residing primarily in intracellular vesicles and the endoplasmic reticulum 3. Since mammals cannot synthesize riboflavin, MR1 functions as a sensor of the microbial metabolome, enabling early detection of intracellular infections 3. The MR1-MAIT cell axis represents a novel paradigm in antigen presentation, allowing immunosurveillance through recognition of metabolites unique to bacteria and yeast 2. This system provides a mechanism for the immune system to detect microbial presence through metabolic signatures rather than traditional peptide antigens 4.

Sources cited
1
MR1 presents microbial riboflavin-derivative antigens to MAIT cells
PMID: 31406380
2
MR1 structure is distinct from MHC/CD1 families and binds vitamin B2/B9 metabolites from bacterial pathways
PMID: 23051753
3
MR1 is conserved across mammals, has limited surface expression, and can detect microbial metabolome
PMID: 30449535
4
MR1 enables T cell recognition of non-peptidic small molecules, expanding antigen range beyond peptides
PMID: 25271021
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
ImmunodeficiencyOpen Targets
0.33Weak
alcohol drinkingOpen Targets
0.11Weak
neoplasmOpen Targets
0.10Weak
cancerOpen Targets
0.10Weak
infectionOpen Targets
0.10Weak
Alzheimer diseaseOpen Targets
0.10Suggestive
autoimmune diseaseOpen Targets
0.08Suggestive
gliomaOpen Targets
0.08Suggestive
ovarian cancerOpen Targets
0.08Suggestive
cytomegalovirus infectionOpen Targets
0.08Suggestive
non-small cell lung carcinomaOpen Targets
0.08Suggestive
Immunodeficiency due to a late component of complements deficiencyOpen Targets
0.07Suggestive
idiopathic membranous glomerulonephritisOpen Targets
0.07Suggestive
Morvan syndromeOpen Targets
0.07Suggestive
immune system diseaseOpen Targets
0.07Suggestive
C1 inhibitor deficiencyOpen Targets
0.07Suggestive
type II hypersensitivity reaction diseaseOpen Targets
0.07Suggestive
immunodeficiency 28Open Targets
0.06Suggestive
Mendelian susceptibility to mycobacterial diseases due to complete IFNgammaR2 deficiencyOpen Targets
0.06Suggestive
varicella, severe recurrentOpen Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
B2MProtein interaction91%TAPBPLProtein interaction91%CD8AProtein interaction73%HLA-EProtein interaction73%DEFB119Shared pathway50%DEFB107AShared pathway40%
Tissue Expression6 tissues
Lung
100%
Bone Marrow
67%
Ovary
64%
Liver
36%
Brain
32%
Heart
31%
Gene Interaction Network
Click a node to explore
MR1B2MTAPBPLCD8AHLA-EDEFB119DEFB107A
PROTEIN STRUCTURE
Preparing viewer…
PDB6PUD · 1.80 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.38LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.06 [0.82–1.38]
RankingsWhere MR1 stands among ~20K protein-coding genes
  • #6,343of 20,598
    Most Researched75
  • #14,389of 17,882
    Most Constrained (LOEUF)1.38
Genes detectedMR1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
The biology and functional importance of MAIT cells.
PMID: 31406380
Nat Immunol · 2019
1.00
2
T cell antigen receptor recognition of antigen-presenting molecules.
PMID: 25493333
Annu Rev Immunol · 2015
0.90
3
MR1-dependent antigen presentation.
PMID: 30449535
Semin Cell Dev Biol · 2018
0.80
4
MR1 antigen presentation to MAIT cells and other MR1-restricted T cells.
PMID: 37773272
Nat Rev Immunol · 2024
0.70
5
MR1 discovery.
PMID: 27464703
Immunogenetics · 2016
0.60