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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
MSH4
mutS homolog 4
Chromosome 1 Β· 1p31.1
NCBI Gene: 4438Ensembl: ENSG00000057468.7HGNC: HGNC:7327UniProt: O15457
46PubMed Papers
22Diseases
0Drugs
15Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingreciprocal meiotic recombinationdouble-stranded DNA bindingchromosomespermatogenic failure 2premature ovarian failure 20azoospermiaprimary ovarian insufficiency
✦AI Summary

MSH4 (mutS homolog 4) is a meiosis-specific protein essential for reciprocal recombination and proper chromosome 1 during meiosis 1. The protein functions as part of the MSH4-MSH5 (MutSΞ³) complex, which binds to branched recombination intermediates and associates with the MLH1-MLH3 (MutLΞ³) nuclease to facilitate crossover formation 2. MSH4 physically interacts with RAD51 and DMC1, key DNA strand-exchange proteins involved in homologous recombination, suggesting its role in early meiotic recombination machinery 3. Expression is restricted to reproductive tissues, with transcripts detectable only in testis and ovary 1. Pathogenic variants in MSH4 are associated with both male and female infertility. In females, MSH4 mutations cause premature ovarian insufficiency (POI), accounting for a subset of cases where genetic screening identifies causative variants 45. In males, MSH4 variants contribute to spermatogenic failure and primary infertility 6. The gene demonstrates clinical significance as part of genetic diagnostic panels for reproductive disorders, with identification of pathogenic variants enabling personalized medical management and genetic counseling for affected patients 57.

Sources cited
1
MSH4 is meiosis-specific, required for reciprocal recombination and proper chromosome segregation, with expression only in testis and ovary
PMID: 9299235
2
MSH4-MSH5 complex binds recombination intermediates and associates with MLH1-MLH3 nuclease for crossover formation
PMID: 32814904
3
MSH4 physically interacts with RAD51 and DMC1 DNA strand-exchange proteins during meiotic recombination
PMID: 15489243
4
MSH4 variants identified in POI patients, including compound heterozygous and digenic variants with MSH5
PMID: 36793102
5
MSH4 confirmed as causal for POI with high diagnostic yield in genetic screening
PMID: 36099812
6
MSH4 variants identified as causative in male infertility and spermatogenic failure
PMID: 39267058
7
MSH4 listed among genes associated with nonsyndromic POI involved in meiosis/DNA repair pathways
PMID: 34794894
Disease Associationsβ“˜22
spermatogenic failure 2Open Targets
0.72Strong
premature ovarian failure 20Open Targets
0.62Moderate
azoospermiaOpen Targets
0.57Moderate
primary ovarian insufficiencyOpen Targets
0.48Moderate
genetic non-acquired premature ovarian failureOpen Targets
0.48Moderate
46,XX gonadal dysgenesisOpen Targets
0.38Weak
46 XX gonadal dysgenesisOpen Targets
0.37Weak
oligospermiaOpen Targets
0.34Weak
Premature ovarian insufficiencyOpen Targets
0.34Weak
cervical carcinomaOpen Targets
0.20Weak
genetic disorderOpen Targets
0.19Weak
partial chromosome Y deletionOpen Targets
0.07Suggestive
spermatogenic failure 50Open Targets
0.06Suggestive
spermatogenic failure 57Open Targets
0.06Suggestive
spinocerebellar ataxia type 32Open Targets
0.06Suggestive
spermatogenic failure 25Open Targets
0.06Suggestive
spermatogenic failure 71Open Targets
0.06Suggestive
spermatogenic failure, X-linked, 2Open Targets
0.06Suggestive
isochromosomy YpOpen Targets
0.06Suggestive
congenital bilateral absence of vas deferensOpen Targets
0.06Suggestive
Premature ovarian failure 20UniProt
Spermatogenic failure 2UniProt
Pathogenic Variants15
NM_002440.4(MSH4):c.2261C>T (p.Ser754Leu)Pathogenic
Premature ovarian insufficiency|Oligospermia|Non-obstructive azoospermia|Spermatogenic failure 2|Premature ovarian failure 20
β˜…β˜…β˜†β˜†2021β†’ Residue 754
NM_002440.4(MSH4):c.1686del (p.Lys562_Val563insTer)Likely pathogenic
Non-obstructive azoospermia
β˜…β˜†β˜†β˜†2020β†’ Residue 562
NM_002440.4(MSH4):c.2198C>A (p.Ser733Ter)Likely pathogenic
Non-obstructive azoospermia|Premature ovarian failure 20|Spermatogenic failure 2
β˜…β˜†β˜†β˜†2020β†’ Residue 733
NM_002440.4(MSH4):c.1453C>T (p.Gln485Ter)Likely pathogenic
Non-obstructive azoospermia
β˜…β˜†β˜†β˜†2020β†’ Residue 485
NM_002440.4(MSH4):c.2355+1G>APathogenic
Premature ovarian failure 20
β˜†β˜†β˜†β˜†2022
NM_002440.4(MSH4):c.1552C>T (p.Gln518Ter)Pathogenic
Spermatogenic failure 2
β˜†β˜†β˜†β˜†2022β†’ Residue 518
NM_002440.4(MSH4):c.805_812del (p.Val269fs)Pathogenic
Spermatogenic failure 2
β˜†β˜†β˜†β˜†2022β†’ Residue 269
NM_002440.4(MSH4):c.1950G>A (p.Trp650Ter)Pathogenic
Spermatogenic failure 2
β˜†β˜†β˜†β˜†2022β†’ Residue 650
NM_002440.4(MSH4):c.2179del (p.Asp727fs)Pathogenic
Spermatogenic failure 2
β˜†β˜†β˜†β˜†2022β†’ Residue 727
NM_002440.4(MSH4):c.2222_2225del (p.Lys741fs)Pathogenic
Genetic non-acquired premature ovarian failure|Spermatogenic failure 2
β˜†β˜†β˜†β˜†2022β†’ Residue 741
NM_002440.4(MSH4):c.2728C>T (p.Arg910Ter)Pathogenic
Genetic non-acquired premature ovarian failure
β˜†β˜†β˜†β˜†2019β†’ Residue 910
NM_002440.4(MSH4):c.1855A>G (p.Met619Val)Likely pathogenic
Genetic non-acquired premature ovarian failure
β˜†β˜†β˜†β˜†2019β†’ Residue 619
NM_002440.4(MSH4):c.1025C>T (p.Thr342Ile)Likely pathogenic
Genetic non-acquired premature ovarian failure
β˜†β˜†β˜†β˜†2019β†’ Residue 342
NM_002440.4(MSH4):c.1063A>G (p.Ile355Val)Likely pathogenic
Genetic non-acquired premature ovarian failure
β˜†β˜†β˜†β˜†2019β†’ Residue 355
NM_002440.4(MSH4):c.2374A>G (p.Thr792Ala)Likely pathogenic
Genetic non-acquired premature ovarian failure
β˜†β˜†β˜†β˜†2019β†’ Residue 792
View on ClinVar β†—
Related Genes
MLH3Protein interaction100%EXO1Protein interaction100%RAD51Protein interaction99%BRCA2Protein interaction98%SYCP3Protein interaction95%HORMAD1Protein interaction94%
Tissue Expression6 tissues
Ovary
100%
Lung
44%
Heart
42%
Bone Marrow
34%
Brain
17%
Liver
15%
Gene Interaction Network
Click a node to explore
MSH4MLH3EXO1RAD51BRCA2SYCP3HORMAD1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt O15457
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.19LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.91 [0.71–1.19]
RankingsWhere MSH4 stands among ~20K protein-coding genes
  • #9,348of 20,598
    Most Researched46
  • #2,467of 5,498
    Most Pathogenic Variants15
  • #12,489of 17,882
    Most Constrained (LOEUF)1.19
Genes detectedMSH4
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Genetics of ovarian insufficiency and defects of folliculogenesis.
PMID: 34794894
Best Pract Res Clin Endocrinol Metab Β· 2022
1.00
2
Whole exome sequencing analysis of 167 men with primary infertility.
PMID: 39267058
BMC Med Genomics Β· 2024
0.90
3
Next-generation sequencing of 500 POI patients identified novel responsible monogenic and oligogenic variants.
PMID: 36793102
J Ovarian Res Β· 2023
0.80
4
Regulation of the MLH1-MLH3 endonuclease in meiosis.
PMID: 32814904
Nature Β· 2020
0.70
5
Genetic landscape of a large cohort of Primary Ovarian Insufficiency: New genes and pathways and implications for personalized medicine.
PMID: 36099812
EBioMedicine Β· 2022
0.60