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GeneE
25 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
MYCBP2
MYC binding protein 2
Chromosome 13 Β· 13q22.3
NCBI Gene: 23077Ensembl: ENSG00000005810.21HGNC: HGNC:23386UniProt: O75592
163PubMed Papers
20Diseases
0Drugs
17Pathogenic Variants
FUNCTIONAL ROLE
Highly Constrained
RESEARCH IMPACT
Trending
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
nucleoplasmguanyl-nucleotide exchange factor activitynucleusprotein K48-linked ubiquitinationcomplex neurodevelopmental disorderneurodegenerative diseasehair colorRespiratory insufficiency
✦AI Summary

MYCBP2 is an atypical E3 ubiquitin ligase with distinctive threonine/serine esterification activity, unlike conventional lysine-targeting E3 ligases 1. It contains two essential catalytic cysteine residues that relay ubiquitin to substrates via thioester intermediates and interacts with E2 enzymes UBE2D1, UBE2D3, UBE2E1, and UBE2L3 1. Functionally, MYCBP2 is critical for neurodevelopment, particularly axon growth and navigation. Loss-of-function MYCBP2 variants cause a neurodevelopmental disorder featuring corpus callosum defects, developmental delay, intellectual disability, epilepsy, and autistic features 2. MYCBP2 mediates Wallerian axon degeneration through NMNAT2 destabilization and regulates EPHB2 receptor signaling, stabilizing this protein for efficient signal transduction 34. Beyond neurodevelopment, MYCBP2 regulates diverse cellular processes including TSC2 degradation, circadian gene expression via NR1D1 ubiquitination, HNF4Ξ±-mediated lipid metabolism, and TRPV1 internalization. In hepatocellular carcinoma, MYCBP2 acts as a potential tumor suppressor by promoting HNF4Ξ± degradation and reprogramming lipid metabolism 5. These findings identify MYCBP2 as a multifunctional signaling hub with emerging therapeutic potential in neurodevelopmental and metabolic disorders.

Sources cited
1
MYCBP2 is an atypical E3 ligase with threonine/serine esterification activity via two catalytic cysteines and interacts with specific E2 enzymes
PMID: 29643511
2
MYCBP2 loss-of-function variants cause neurodevelopmental disorder with corpus callosum defects, developmental delay, intellectual disability, epilepsy, and autistic features
PMID: 36200388
3
MYCBP2 (PHR1) is a druggable enzyme in Wallerian axon degeneration pathways
PMID: 32152523
4
MYCBP2 is essential for efficient EPHB2 tyrosine kinase receptor signaling and stabilizes EPHB2 protein levels
PMID: 38289221
5
MYCBP2 acts as a potential tumor suppressor in MASH-related HCC by promoting HNF4Ξ± ubiquitination and degradation to reprogram lipid metabolism
PMID: 40181155
Disease Associationsβ“˜20
complex neurodevelopmental disorderOpen Targets
0.37Weak
neurodegenerative diseaseOpen Targets
0.30Weak
hair colorOpen Targets
0.27Weak
Respiratory insufficiencyOpen Targets
0.25Weak
knee fractureOpen Targets
0.25Weak
kidney diseaseOpen Targets
0.22Weak
rheumatic diseaseOpen Targets
0.20Weak
genetic disorderOpen Targets
0.19Weak
ankylosing spondylitisOpen Targets
0.19Weak
MYCBP2-related developmental delay with corpus callosum defectsOpen Targets
0.15Weak
Neurodevelopmental disorderOpen Targets
0.12Weak
Global developmental delayOpen Targets
0.12Weak
placenta praeviaOpen Targets
0.12Weak
autism spectrum disorder due to AUTS2 deficiencyOpen Targets
0.12Weak
prostate cancerOpen Targets
0.11Weak
Familial prostate cancerOpen Targets
0.11Weak
acute lymphoblastic leukemiaOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.04Suggestive
breast cancerOpen Targets
0.04Suggestive
cancerOpen Targets
0.03Suggestive
Pathogenic Variants17
NM_015057.5(MYCBP2):c.4939C>T (p.Gln1647Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 1647
NM_015057.5(MYCBP2):c.4118A>G (p.Asp1373Gly)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 1373
NM_015057.5(MYCBP2):c.3983_3984del (p.Gly1328fs)Pathogenic
MYCBP2-associated neurodevelopmental disorder
β˜…β˜†β˜†β˜†2025β†’ Residue 1328
NM_015057.5(MYCBP2):c.556G>T (p.Glu186Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 186
NM_015057.5(MYCBP2):c.1612C>T (p.Arg538Ter)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 538
NM_015057.5(MYCBP2):c.8867_8868insG (p.Phe2957fs)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 2957
NM_015057.5(MYCBP2):c.13528G>T (p.Glu4510Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 4510
NM_015057.5(MYCBP2):c.8146C>T (p.Arg2716Ter)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 2716
NM_015057.5(MYCBP2):c.12463C>T (p.Arg4155Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 4155
NM_015057.5(MYCBP2):c.2803C>T (p.Arg935Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 935
NM_015057.5(MYCBP2):c.11855T>C (p.Met3952Thr)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 3952
NM_015057.5(MYCBP2):c.7188-2A>GLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2023
NM_015057.5(MYCBP2):c.4942-2A>CLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2023
NM_015057.5(MYCBP2):c.2143C>T (p.Arg715Ter)Pathogenic
See cases
β˜…β˜†β˜†β˜†2023β†’ Residue 715
NM_015057.5(MYCBP2):c.7401G>A (p.Lys2467=)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 2467
NM_015057.5(MYCBP2):c.13669C>T (p.Arg4557Cys)Pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 4557
NM_015057.5(MYCBP2):c.9896T>G (p.Val3299Gly)Pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 3299
View on ClinVar β†—
Related Genes
FBXW7Protein interaction100%MYCProtein interaction99%UBCProtein interaction98%RPS27AProtein interaction97%UBBProtein interaction96%UBA52Protein interaction95%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
95%
Ovary
68%
Lung
45%
Heart
43%
Liver
28%
Gene Interaction Network
Click a node to explore
MYCBP2FBXW7MYCUBCRPS27AUBBUBA52
PROTEIN STRUCTURE
Preparing viewer…
PDB5O6C Β· 1.75 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.24Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.20 [0.17–0.24]
RankingsWhere MYCBP2 stands among ~20K protein-coding genes
  • #2,757of 20,598
    Most Researched163 Β· top quartile
  • #2,325of 5,498
    Most Pathogenic Variants17
  • #723of 17,882
    Most Constrained (LOEUF)0.24 Β· top 5%
Genes detectedMYCBP2
Sources retrieved25 papers
Response timeβ€”
πŸ“„ Sources
25β–Ό
1
Targeting autophagy using small-molecule compounds to improve potential therapy of Parkinson's disease.
PMID: 34729301
Acta Pharm Sin B Β· 2021
1.00
2
Loss-of-function variants in MYCBP2 cause neurobehavioural phenotypes and corpus callosum defects.
PMID: 36200388
Brain Β· 2023
0.90
3
Activity-based E3 ligase profiling uncovers an E3 ligase with esterification activity.
PMID: 29643511
Nature Β· 2018
0.80
4
Annexin A1 binds PDZ and LIM domain 7 to inhibit adipogenesis and prevent obesity.
PMID: 39174522
Signal Transduct Target Ther Β· 2024
0.70
5
Trans-ancestral rare variant association study with machine learning-based phenotyping for metabolic dysfunction-associated steatotic liver disease.
PMID: 40065360
Genome Biol Β· 2025
0.68