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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
NAA15
N-alpha-acetyltransferase 15, NatA auxiliary subunit
Chromosome 4 Β· 4q31.1
NCBI Gene: 80155Ensembl: ENSG00000164134.14HGNC: HGNC:30782UniProt: A0A0B4J1W3
132PubMed Papers
21Diseases
0Drugs
160Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
acetyltransferase activityribosome bindingRNA bindingprotein bindingintellectual disability, autosomal dominant 50genetic disorderIntellectual disabilityNeurodevelopmental disorder
✦AI Summary

NAA15 encodes the auxiliary subunit of the N-terminal acetyltransferase A (NatA) complex, which pairs with the catalytic subunit NAA10 to perform N-terminal acetylation of cytosolic proteins 1. This post-translational modification affects approximately 80% of cytosolic proteins and is essential for normal cellular function 2. The NatA complex plays a critical role in neurodevelopment, as disruption leads to significant developmental abnormalities. Loss-of-function variants in NAA15 cause haploinsufficiency and are associated with a neurodevelopmental syndrome characterized by variable intellectual disability, autism spectrum disorder, delayed speech and motor milestones, mild craniofacial dysmorphology, congenital cardiac anomalies, and seizures 12. RNA analysis demonstrates that truncating variants lead to transcript degradation through nonsense-mediated decay 1. Functional studies in mouse models show that NAA15 deficiency increases neuronal count and impairs axon and synapse formation, leading to aberrant brain development and behavioral abnormalities 3. The syndrome also presents with distinctive ophthalmic manifestations including cortical visual impairment and various refractive errors 4. Neuroimaging reveals multiple anatomical brain abnormalities, with affected individuals showing structure-function correlations between brain defects and developmental outcomes 5.

Sources cited
1
NAA15 encodes auxiliary subunit of NatA complex, variants cause neurodevelopmental syndrome with ID, ASD, and cardiac anomalies
PMID: 29656860
2
N-terminal acetylation affects 80% of cytosolic proteins, NAA15 variants cause variable neurodevelopmental phenotypes
PMID: 37130971
3
NAA15 deficiency increases neuronal count and impairs axon/synapse formation in mouse models
PMID: 39825710
4
Neuroimaging shows multiple brain anatomical abnormalities with structure-function correlations
PMID: 40204117
5
NAA15-related syndrome presents with ophthalmic manifestations including cortical visual impairment
PMID: 38352572
Disease Associationsβ“˜21
intellectual disability, autosomal dominant 50Open Targets
0.79Strong
genetic disorderOpen Targets
0.54Moderate
Intellectual disabilityOpen Targets
0.52Moderate
Neurodevelopmental disorderOpen Targets
0.46Moderate
neurodegenerative diseaseOpen Targets
0.45Moderate
syndromic intellectual disabilityOpen Targets
0.40Weak
complex neurodevelopmental disorderOpen Targets
0.37Weak
Global developmental delayOpen Targets
0.34Weak
Neurodevelopmental delayOpen Targets
0.34Weak
autismOpen Targets
0.34Weak
alcohol drinkingOpen Targets
0.24Weak
endocrine neoplasmOpen Targets
0.22Weak
hypertrophic cardiomyopathyOpen Targets
0.19Weak
autism spectrum disorderOpen Targets
0.14Weak
developmental disorder of mental healthOpen Targets
0.12Weak
ArthropathyOpen Targets
0.03Suggestive
congenital heart diseaseOpen Targets
0.02Suggestive
gastric cancerOpen Targets
0.02Suggestive
thyroid cancerOpen Targets
0.02Suggestive
papillary thyroid carcinomaOpen Targets
0.02Suggestive
Intellectual developmental disorder, autosomal dominant 50, with behavioral abnormalitiesUniProt
Pathogenic Variants160
NM_057175.5(NAA15):c.897del (p.Leu301fs)Likely pathogenic
Intellectual disability|Intellectual disability, autosomal dominant 50
β˜…β˜…β˜†β˜†2026β†’ Residue 301
NM_057175.5(NAA15):c.1841dup (p.Asn614fs)Pathogenic
not provided|Intellectual disability, autosomal dominant 50
β˜…β˜…β˜†β˜†2025β†’ Residue 614
NM_057175.5(NAA15):c.430C>T (p.Arg144Ter)Pathogenic
not provided|Intellectual disability, autosomal dominant 50|Neurodevelopmental disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 144
NM_057175.5(NAA15):c.239_240del (p.His80fs)Pathogenic
Intellectual disability, autosomal dominant 50|not provided|See cases|Inborn genetic diseases|Global developmental delay|NAA15-related disorder|Intellectual disability
β˜…β˜…β˜†β˜†2025β†’ Residue 80
NM_057175.4(NAA15):c.228_232del (p.Asp76Glufs)Pathogenic
Intellectual disability, autosomal dominant 50|not provided|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 76
NM_057175.5(NAA15):c.908-2A>GPathogenic
Intellectual disability, autosomal dominant 50|not provided
β˜…β˜…β˜†β˜†2025
NM_057175.5(NAA15):c.1753+1G>TPathogenic
not provided|Intellectual disability, autosomal dominant 50
β˜…β˜…β˜†β˜†2025
NM_057175.5(NAA15):c.1841del (p.Asn614fs)Likely pathogenic
Neurodevelopmental disorder|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 614
NM_057175.5(NAA15):c.1645C>T (p.Arg549Ter)Pathogenic
not provided|Intellectual disability, autosomal dominant 50
β˜…β˜…β˜†β˜†2025β†’ Residue 549
NM_057175.5(NAA15):c.231dup (p.Lys78fs)Pathogenic
Intellectual disability, autosomal dominant 50
β˜…β˜…β˜†β˜†2025β†’ Residue 78
NM_057175.5(NAA15):c.692-2_692-1delPathogenic
not provided|Intellectual disability, autosomal dominant 50
β˜…β˜…β˜†β˜†2025
NM_057175.5(NAA15):c.721G>T (p.Glu241Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 241
NM_057175.5(NAA15):c.2344C>T (p.Arg782Ter)Pathogenic
Intellectual disability, autosomal dominant 50|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 782
NM_057175.5(NAA15):c.1410+1G>APathogenic
Inborn genetic diseases|not provided
β˜…β˜…β˜†β˜†2024
NM_057175.5(NAA15):c.1539+1G>APathogenic
not provided|Intellectual disability, autosomal dominant 50
β˜…β˜…β˜†β˜†2024
NM_057175.5(NAA15):c.1009_1012del (p.Glu337fs)Pathogenic
Intellectual disability, autosomal dominant 50|Inborn genetic diseases
β˜…β˜…β˜†β˜†2024β†’ Residue 337
NM_057175.5(NAA15):c.382C>T (p.Arg128Ter)Pathogenic
Inborn genetic diseases|Intellectual disability, autosomal dominant 50|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 128
NM_057175.5(NAA15):c.1165C>T (p.Gln389Ter)Pathogenic
Intellectual disability, autosomal dominant 50|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 389
NM_057175.5(NAA15):c.1947+1G>APathogenic
not provided
β˜…β˜…β˜†β˜†2023
NM_057175.5(NAA15):c.1477C>T (p.Gln493Ter)Pathogenic
not provided|NAA15-related syndrome
β˜…β˜…β˜†β˜†2019β†’ Residue 493
View on ClinVar β†—
Related Genes
YAE1Shared pathway100%ZNG1FShared pathway100%ZNG1CShared pathway100%CISD3Shared pathway100%ZNG1EShared pathway100%IBA57Shared pathway100%
Tissue Expression6 tissues
Bone Marrow
100%
Heart
81%
Brain
66%
Lung
50%
Ovary
44%
Liver
44%
Gene Interaction Network
Click a node to explore
NAA15YAE1ZNG1FZNG1CCISD3ZNG1EIBA57
PROTEIN STRUCTURE
Preparing viewer…
PDB9FPZ Β· 2.69 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.44Moderately Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.27 [0.17–0.44]
RankingsWhere NAA15 stands among ~20K protein-coding genes
  • #3,533of 20,598
    Most Researched132 Β· top quartile
  • #464of 5,498
    Most Pathogenic Variants160 Β· top 10%
  • #2,384of 17,882
    Most Constrained (LOEUF)0.44 Β· top quartile
Genes detectedNAA15
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.
PMID: 28191889
Nat Genet Β· 2017
1.00
2
Expanding the phenotypic spectrum of NAA10-related neurodevelopmental syndrome and NAA15-related neurodevelopmental syndrome.
PMID: 37130971
Eur J Hum Genet Β· 2023
0.90
3
Truncating Variants in NAA15 Are Associated with Variable Levels of Intellectual Disability, Autism Spectrum Disorder, and Congenital Anomalies.
PMID: 29656860
Am J Hum Genet Β· 2018
0.80
4
Naa15 Haploinsufficiency and De Novo Missense Variants Associate With Neurodevelopmental Disorders and Interfere With Neurogenesis and Neuron Development.
PMID: 39825710
Autism Res Β· 2025
0.70
5
Neuroanatomical features of NAA10 and NAA15-related neurodevelopmental syndromes.
PMID: 40204117
J Neuroradiol Β· 2025
0.60