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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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NDST3
N-deacetylase and N-sulfotransferase 3
Chromosome 4 · 4q26
NCBI Gene: 9348Ensembl: ENSG00000164100.10HGNC: HGNC:7682UniProt: O95803
25PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
heparan sulfate proteoglycan biosynthetic processheparan sulfate N-sulfotransferase activityheparan sulfate N-deacetylase activityGolgi apparatusschizophreniaalopecia areataAnxietysmoking initiation
✦AI Summary

NDST3 (N-deacetylase and N-sulfotransferase 3) is a bifunctional enzyme that traditionally functions in heparan sulfate biosynthesis by catalyzing both N-deacetylation and N-sulfation of glucosamine residues [UniProt]. However, recent research has revealed an expanded role for NDST3 as a novel histone deacetylase (HDAC) family member that specifically deacetylates α-tubulin 1. This tubulin deacetylation activity critically regulates lysosomal function by suppressing V-ATPase assembly and reducing lysosomal acidification 1. NDST3 demonstrates significant clinical relevance across multiple neurological and psychiatric disorders. The enzyme is downregulated in tissues from ALS/FTD patients with C9orf72 mutations, and its deficiency exacerbates proteotoxicity from pathogenic poly-dipeptides 1. Genetic variants in NDST3, particularly rs11098403, show association with schizophrenia risk in Han Chinese populations 2. Additionally, NDST3 variants influence salt sensitivity and blood pressure regulation through modulation of heparan sulfate composition 3. Emerging evidence suggests therapeutic potential, with NDST3-mediated epigenetic reprogramming demonstrating ability to reverse neurodegeneration and restore motor function in Parkinson's disease models 4. These findings position NDST3 as a promising therapeutic target for neurodegenerative diseases through its dual roles in microtubule acetylation and lysosomal function 5.

Sources cited
1
NDST3 functions as a histone deacetylase that deacetylates α-tubulin and regulates V-ATPase assembly and lysosomal acidification
PMID: 34435379
2
rs11098403 variant in NDST3 shows significant association with schizophrenia risk in Han Chinese populations
PMID: 26731438
3
NDST3 variants influence salt sensitivity and blood pressure regulation through heparan sulfate modulation
PMID: 39247955
4
NDST3-mediated epigenetic reprogramming can reverse neurodegeneration in Parkinson's disease models
PMID: 41268696
5
NDST3's role in microtubule acetylation and lysosomal acidification provides therapeutic insights for neurological diseases
PMID: 36135988
Disease Associationsⓘ20
schizophreniaOpen Targets
0.39Weak
alopecia areataOpen Targets
0.29Weak
AnxietyOpen Targets
0.28Weak
smoking initiationOpen Targets
0.26Weak
digestive system neoplasmOpen Targets
0.25Weak
liver diseaseOpen Targets
0.23Weak
kidney diseaseOpen Targets
0.19Weak
keratoconusOpen Targets
0.18Weak
phototoxic dermatitisOpen Targets
0.17Weak
preeclampsiaOpen Targets
0.17Weak
diabetes mellitusOpen Targets
0.17Weak
ankylosing spondylitisOpen Targets
0.16Weak
hepatocellular carcinomaOpen Targets
0.07Suggestive
amyotrophic lateral sclerosisOpen Targets
0.04Suggestive
22q11.2 deletion syndromeOpen Targets
0.03Suggestive
hypertriglyceridemia 2Open Targets
0.03Suggestive
Combined hyperlipidemiaOpen Targets
0.03Suggestive
pancreatic triacylglycerol lipase deficiencyOpen Targets
0.03Suggestive
X-Linked Combined Immunodeficiency DiseasesOpen Targets
0.03Suggestive
Alzheimer diseaseOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
NDST1Shared pathway100%NDST2Shared pathway100%NDST4Shared pathway100%SULT1C3Protein interaction76%SULT1C4Protein interaction76%SULT1B1Protein interaction73%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
37%
Liver
24%
Ovary
7%
Lung
2%
Heart
0%
Gene Interaction Network
Click a node to explore
NDST3NDST1NDST2NDST4SULT1C3SULT1C4SULT1B1
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt O95803
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.70LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.55 [0.43–0.70]
RankingsWhere NDST3 stands among ~20K protein-coding genes
  • #13,022of 20,598
    Most Researched25
  • #5,322of 17,882
    Most Constrained (LOEUF)0.70
Genes detectedNDST3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Unveiling ac4C modification pattern: a prospective target for improving the response to immunotherapeutic strategies in melanoma.
PMID: 40050821
J Transl Med · 2025
1.00
2
NDST3 deacetylates α-tubulin and suppresses V-ATPase assembly and lysosomal acidification.
PMID: 34435379
EMBO J · 2021
0.90
3
A comprehensive analysis of NDST3 for schizophrenia and bipolar disorder in Han Chinese.
PMID: 26731438
Transl Psychiatry · 2016
0.80
4
Tubulin deacetylase NDST3 modulates lysosomal acidification: Implications in neurological diseases.
PMID: 36135988
Bioessays · 2022
0.70
5
NDST3-Induced Epigenetic Reprogramming Reverses Neurodegeneration in Parkinson's Disease.
PMID: 41268696
Adv Sci (Weinh) · 2026
0.60