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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
NKX6-2
NK6 homeobox 2
Chromosome 10 Β· 10q26.3
NCBI Gene: 84504Ensembl: ENSG00000148826.9HGNC: HGNC:19321UniProt: Q9C056
15PubMed Papers
21Diseases
0Drugs
23Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
sequence-specific double-stranded DNA bindingregulation of myelinationchromatinDNA bindingspastic ataxia 8, autosomal recessive, with hypomyelinating leukodystrophyAutosomal recessive spastic ataxia with leukoencephalopathygenetic disorderspermatocele
✦AI Summary

NKX6-2 is a transcription factor with repressor activity that plays a critical developmental role in oligodendrocyte maturation and myelination 1. As a sequence-specific DNA-binding transcription factor, NKX6-2 regulates genes essential for myelin formation, including MBP and PLP1 23. The protein functions as part of a transcriptional network controlling oligodendrocyte differentiation; ectopic expression of NKX6-2 alongside SOX10 and OLIG2 efficiently converts human fibroblasts and neural progenitors into mature oligodendrocytes in vitro, with conversion efficiency reaching 70% 3. NKX6-2 is involved in regulating axon-glial interactions at myelin paranodes [UniProt]. Mutations in NKX6-2 cause spastic ataxia 8, an autosomal recessive hypomyelinating leukodystrophy with significant clinical heterogeneity 145. Affected individuals present with early-onset progressive spasticity, cerebellar ataxia, and widespread brain hypomyelination, with phenotypic severity ranging from neonatal onset with rapid progression to childhood-onset predominantly motor disease 5. NKX6-2 deficiency impairs oligodendrocyte maturation and causes widespread CNS hypomyelination and poor motor coordination 1. These findings establish NKX6-2 as essential for normal myelin development and support its inclusion in diagnostic panels for hypomyelinating leukodystrophy and spastic ataxia.

Sources cited
1
NKX6-2 mutations cause progressive spastic ataxia and hypomyelination; NKX6-2 is a transcriptional repressor involved in oligodendrocyte maturation; mouse ortholog deficiency results in widespread brain hypomyelination
PMID: 28575651
2
NKX6.2 co-expression with SOX10 and OLIG2 converts human fibroblasts into mature oligodendrocyte-like cells; NKX6.2 expression enables oligodendrocyte marker expression and axon ensheathing
PMID: 33770499
3
SOX10, OLIG2, and NKX6.2 co-expression generates oligodendrocytes from iPSC-derived neural progenitors with up to 70% efficiency; iPSC-derived oligodendrocytes are suitable for disease modeling
PMID: 28246330
4
NKX6-2 biallelic variants cause autosomal recessive hypomyelinating leukodystrophy with psychomotor delay, spastic quadriparesis, nystagmus, seizures, and developmental regression
PMID: 29388673
5
NKX6-2 mutations show phenotypic spectrum from severe neonatal onset to milder childhood-onset motor phenotype; early nystagmus, cerebellar ataxia, and hypomyelination are hallmark features
PMID: 31509304
6
NKX6.2 downregulation occurs in disease-associated oligodendrocyte precursor cells with failed differentiation into mature oligodendrocytes
PMID: 39217398
Disease Associationsβ“˜21
spastic ataxia 8, autosomal recessive, with hypomyelinating leukodystrophyOpen Targets
0.82Strong
Autosomal recessive spastic ataxia with leukoencephalopathyOpen Targets
0.58Moderate
genetic disorderOpen Targets
0.19Weak
spermatoceleOpen Targets
0.17Weak
male reproductive organ cancerOpen Targets
0.13Weak
oral mucosa leukoplakiaOpen Targets
0.08Suggestive
joint diseaseOpen Targets
0.07Suggestive
Charcot-Marie-Tooth disease type 1AOpen Targets
0.06Suggestive
placental retentionOpen Targets
0.06Suggestive
schizophreniaOpen Targets
0.06Suggestive
Charcot-Marie-Tooth disease type 1COpen Targets
0.06Suggestive
VertigoOpen Targets
0.05Suggestive
Autosomal recessive Charcot-Marie-Tooth disease with hoarsenessOpen Targets
0.05Suggestive
Charcot-Marie-Tooth disease type 4JOpen Targets
0.05Suggestive
Autosomal dominant intermediate Charcot-Marie-Tooth disease type BOpen Targets
0.05Suggestive
Charcot-Marie-Tooth disease dominant intermediate BOpen Targets
0.05Suggestive
Charcot-Marie-Tooth disease type 4AOpen Targets
0.05Suggestive
Charcot-Marie-Tooth disease type 2B1Open Targets
0.05Suggestive
Autosomal dominant Charcot-Marie-Tooth disease type 2LOpen Targets
0.05Suggestive
Charcot-Marie-Tooth disease axonal type 2LOpen Targets
0.05Suggestive
Spastic ataxia 8, autosomal recessive, with hypomyelinating leukodystrophyUniProt
Pathogenic Variants23
NM_177400.3(NKX6-2):c.234dup (p.Leu79fs)Pathogenic
not provided|Spastic ataxia 8, autosomal recessive, with hypomyelinating leukodystrophy
β˜…β˜…β˜†β˜†2024β†’ Residue 79
NM_177400.3(NKX6-2):c.608G>A (p.Trp203Ter)Pathogenic
Spastic ataxia 8, autosomal recessive, with hypomyelinating leukodystrophy
β˜…β˜…β˜†β˜†2024β†’ Residue 203
NM_177400.3(NKX6-2):c.196del (p.Arg66fs)Pathogenic
not provided|Spastic ataxia 8, autosomal recessive, with hypomyelinating leukodystrophy
β˜…β˜…β˜†β˜†2024β†’ Residue 66
NM_177400.3(NKX6-2):c.487C>G (p.Leu163Val)Pathogenic
Spastic ataxia 8, autosomal recessive, with hypomyelinating leukodystrophy
β˜…β˜…β˜†β˜†2024β†’ Residue 163
NM_177400.3(NKX6-2):c.234del (p.Leu79fs)Likely pathogenic
not provided|Spastic ataxia 8, autosomal recessive, with hypomyelinating leukodystrophy
β˜…β˜…β˜†β˜†2023β†’ Residue 79
NM_177400.3(NKX6-2):c.121A>T (p.Lys41Ter)Pathogenic
Spastic ataxia 8, autosomal recessive, with hypomyelinating leukodystrophy
β˜…β˜…β˜†β˜†2023β†’ Residue 41
NM_177400.3(NKX6-2):c.217_235del (p.Gly73fs)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 73
NM_177400.3(NKX6-2):c.161_162insA (p.Gly55fs)Likely pathogenic
Spastic ataxia 8, autosomal recessive, with hypomyelinating leukodystrophy
β˜…β˜†β˜†β˜†2025β†’ Residue 55
NM_177400.3(NKX6-2):c.161delinsAA (p.Leu54fs)Likely pathogenic
Spastic ataxia 8, autosomal recessive, with hypomyelinating leukodystrophy
β˜…β˜†β˜†β˜†2025β†’ Residue 54
NM_177400.3(NKX6-2):c.568_569dup (p.Ser190fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 190
NM_177400.3(NKX6-2):c.216del (p.Gly74fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 74
NM_177400.3(NKX6-2):c.589C>T (p.Gln197Ter)Likely pathogenic
Spastic ataxia 8, autosomal recessive, with hypomyelinating leukodystrophy|not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 197
NM_177400.3(NKX6-2):c.406+1G>TLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2023
NM_177400.3(NKX6-2):c.599G>A (p.Arg200Gln)Pathogenic
Spastic ataxia 8, autosomal recessive, with hypomyelinating leukodystrophy
β˜…β˜†β˜†β˜†2022β†’ Residue 200
NM_177400.3(NKX6-2):c.119del (p.Phe40fs)Pathogenic
Spastic ataxia 8, autosomal recessive, with hypomyelinating leukodystrophy
β˜…β˜†β˜†β˜†2019β†’ Residue 40
NM_177400.3(NKX6-2):c.516C>G (p.Tyr172Ter)Pathogenic
Spastic ataxia 8, autosomal recessive, with hypomyelinating leukodystrophy
β˜…β˜†β˜†β˜†β†’ Residue 172
NM_177400.3(NKX6-2):c.606delinsTA (p.Lys202fs)Pathogenic
Spastic ataxia 8, autosomal recessive, with hypomyelinating leukodystrophy
β˜†β˜†β˜†β˜†2024β†’ Residue 202
NM_177400.3(NKX6-2):c.565G>T (p.Glu189Ter)Pathogenic
Spastic ataxia 8, autosomal recessive, with hypomyelinating leukodystrophy
β˜†β˜†β˜†β˜†2024β†’ Residue 189
NM_177400.3(NKX6-2):c.287_288dup (p.Ala97fs)Likely pathogenic
Spastic ataxia 8, autosomal recessive, with hypomyelinating leukodystrophy
β˜†β˜†β˜†β˜†2023β†’ Residue 97
NM_177400.3(NKX6-2):c.592A>G (p.Asn198Asp)Likely pathogenic
Spastic ataxia 8, autosomal recessive, with hypomyelinating leukodystrophy
β˜†β˜†β˜†β˜†2020β†’ Residue 198
View on ClinVar β†—
Related Genes
RFX6Protein interaction90%GCGProtein interaction89%FOXA2Protein interaction88%SLC2A2Protein interaction88%HNF1AProtein interaction88%ISL1Protein interaction87%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
0%
Ovary
0%
Liver
0%
Lung
0%
Heart
0%
Gene Interaction Network
Click a node to explore
NKX6-2RFX6GCGFOXA2SLC2A2HNF1AISL1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q9C056
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.68LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF1.12 [0.76–1.68]
RankingsWhere NKX6-2 stands among ~20K protein-coding genes
  • #15,636of 20,598
    Most Researched15
  • #2,081of 5,498
    Most Pathogenic Variants23
  • #16,021of 17,882
    Most Constrained (LOEUF)1.68
Genes detectedNKX6-2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
One-step Reprogramming of Human Fibroblasts into Oligodendrocyte-like Cells by SOX10, OLIG2, and NKX6.2.
PMID: 33770499
Stem Cell Reports Β· 2021
1.00
2
Expanding the genetic heterogeneity of intellectual disability.
PMID: 28940097
Hum Genet Β· 2017
0.90
3
Rapid and efficient generation of oligodendrocytes from human induced pluripotent stem cells using transcription factors.
PMID: 28246330
Proc Natl Acad Sci U S A Β· 2017
0.80
4
Identification of spatially-resolved markers of malignant transformation in Intraductal Papillary Mucinous Neoplasms.
PMID: 38553466
Nat Commun Β· 2024
0.70
5
Mutations in NKX6-2 Cause Progressive Spastic Ataxia and Hypomyelination.
PMID: 28575651
Am J Hum Genet Β· 2017
0.60