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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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NLE1
notchless homolog 1
Chromosome 17 · 17q12
NCBI Gene: 54475Ensembl: ENSG00000073536.19HGNC: HGNC:19889UniProt: Q9NVX2
52PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingnucleolusregulation of Notch signaling pathwayneurodegenerative diseaselysosomal storage diseaseneoplasmnon-small cell lung carcinoma
✦AI Summary

NLE1 (notchless homolog 1) is a nucleolar protein primarily functioning as a ribosome biogenesis factor essential for 60S ribosomal subunit assembly 1. NLE1 interacts with the AAA+ ATPase MDN1 through its ubiquitin-like domain, a mechanism conserved from yeast to humans 21. Beyond ribosomal biogenesis, NLE1 regulates Notch signaling and influences cell cycle progression through CDKN1A expression and Wnt pathway components. In cancer biology, NLE1 emerges as a critical oncogenic driver across multiple malignancies. In colorectal cancer, c-MYC-mediated NLE1 upregulation following SMAD4 loss supports protein biosynthesis and drives tumor growth and metastasis 3. Similarly, NLE1 knockdown inhibits proliferation, migration, and invasion in melanoma and non-small cell lung cancer models 45. In melanoma, NLE1 activates PI3K/AKT signaling, while in NSCLC it additionally operates through E2F1-mediated CDK1 transcription 45. In glioblastoma, the NLE1-Notch1 complex regulates brain tumor stem cell self-renewal; targeting NLE1 with edaravone sensitizes cells to radiotherapy 6. Clinically, elevated NLE1 expression correlates with poor prognosis and advanced disease stages across cancers, predicting overall and relapse-free survival in colorectal cancer 3. NLE1 has emerged as a potential therapeutic target in cancer treatment.

Sources cited
1
NLE1 is upregulated by c-MYC in colorectal cancer upon SMAD4 loss; NLE1 limits protein biosynthesis and is required for tumor growth, metastasis, and predicts survival
PMID: 36219392
2
NLE1 interacts with MDN1 in 60S ribosomal subunit assembly; the MDN1-NLE1 interaction mechanism is highly conserved between humans and yeast
PMID: 40207627
3
NLE1 is a direct target of edaravone; NLE1-Notch1 complex regulates brain tumor stem cell self-renewal and therapeutic resistance in glioblastoma
PMID: 39423824
4
NLE1 is elevated in melanoma; NLE1 knockdown inhibits proliferation, migration, enhances apoptosis, and suppresses tumor formation; NLE1 activates PI3K/AKT signaling
PMID: 34019907
5
NLE1 is upregulated in non-small cell lung cancer; NLE1 knockdown inhibits growth and migration; NLE1 activates E2F1-mediated CDK1 transcription and PI3K/Akt signaling
PMID: 36818671
6
NLE1 contains a ubiquitin-like domain that interacts with midasin's MIDAS domain in ribosome maturation; this interaction is conserved between yeast and mammalian cells
PMID: 26601951
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.51Moderate
lysosomal storage diseaseOpen Targets
0.20Weak
neoplasmOpen Targets
0.10Suggestive
non-small cell lung carcinomaOpen Targets
0.07Suggestive
hepatocellular carcinomaOpen Targets
0.07Suggestive
colorectal cancerOpen Targets
0.07Suggestive
melanomaOpen Targets
0.04Suggestive
lung cancerOpen Targets
0.04Suggestive
type 1 diabetes nephropathyOpen Targets
0.02Suggestive
diffuse large B-cell lymphomaOpen Targets
0.02Suggestive
systemic lupus erythematosusOpen Targets
0.02Suggestive
cancerOpen Targets
0.02Suggestive
kidney diseaseOpen Targets
0.02Suggestive
Sjogren syndromeOpen Targets
0.02Suggestive
chronic obstructive pulmonary diseaseOpen Targets
0.02Suggestive
metastatic colorectal cancerOpen Targets
0.01Suggestive
glioblastomaOpen Targets
0.01Suggestive
glioblastoma multiformeOpen Targets
0.01Suggestive
hemolytic-uremic syndromeOpen Targets
0.01Suggestive
liver cancerOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
WDR46Protein interaction100%BYSLProtein interaction100%NOC4LProtein interaction100%TBL3Protein interaction100%WDR36Protein interaction100%RCL1Protein interaction100%
Tissue Expression6 tissues
Ovary
100%
Bone Marrow
66%
Brain
54%
Liver
53%
Lung
44%
Heart
43%
Gene Interaction Network
Click a node to explore
NLE1WDR46BYSLNOC4LTBL3WDR36RCL1
PROTEIN STRUCTURE
Preparing viewer…
PDB6WAJ · 1.90 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.77LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.59 [0.45–0.77]
RankingsWhere NLE1 stands among ~20K protein-coding genes
  • #8,591of 20,598
    Most Researched52
  • #6,292of 17,882
    Most Constrained (LOEUF)0.77
Genes detectedNLE1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
SMAD4 Loss Induces c-MYC-Mediated NLE1 Upregulation to Support Protein Biosynthesis, Colorectal Cancer Growth, and Metastasis.
PMID: 36219392
Cancer Res · 2022
1.00
2
Highly conserved ribosome biogenesis pathways between human and yeast revealed by the MDN1-NLE1 interaction and NLE1 containing pre-60S subunits.
PMID: 40207627
Nucleic Acids Res · 2025
0.90
3
Targeting glioblastoma with a brain-penetrant drug that impairs brain tumor stem cells via NLE1-Notch1 complex.
PMID: 39423824
Stem Cell Reports · 2024
0.80
4
Knockdown of NLE1 inhibits development of malignant melanoma in vitro and in vivo NLE1 promotes development of malignant melanoma.
PMID: 34019907
Exp Cell Res · 2021
0.70
5
Identification of NLE1/CDK1 axis as key regulator in the development and progression of non-small cell lung cancer.
PMID: 36818671
Front Oncol · 2022
0.60