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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
OTC
ornithine transcarbamylase
Chromosome X Β· Xp11.4
NCBI Gene: 5009Ensembl: ENSG00000036473.10HGNC: HGNC:8512UniProt: P00480
131PubMed Papers
21Diseases
0Drugs
440Pathogenic Variants
FUNCTIONAL ROLE
Highly Constrained
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
L-ornithine catabolic processammonium homeostasismitochondrionurea cycleornithine carbamoyltransferase deficiencygenetic disorderHyperammonemiaAbnormal circulating ornithine concentration
✦AI Summary

OTC (ornithine transcarbamylase) catalyzes the second step of the urea cycle, catalyzing the condensation of carbamoyl phosphate with L-ornithine to form L-citrulline 1. This enzymatic reaction is essential for ammonia detoxification, converting toxic ammonia to urea for excretion and maintaining ammonium homeostasis 1. OTC deficiency, caused by mutations in the X-linked OTC gene, is the most common inherited urea cycle disorder 2. Pathogenic OTC variants result in impaired ureagenesis and hyperammonemia, which can present as acute neonatal-onset disease within the first week of life or later-onset disease in either sex 3. Neonatal presentation typically involves rapid development of severe hyperammonemia progressing to cerebral edema, coma, and death without rapid intervention 3. Over 341 distinct mutations have been identified throughout the OTC gene, with most being family-specific 2. High-throughput functional assays can distinguish benign from pathogenic variants and differentiate neonatal-onset from late-onset disease phenotypes 3. Recent evidence demonstrates that OTC deficiency also leads to liver inflammation and fibrosis in heterozygous females 4. AAV gene therapy can correct metabolic abnormalities and prevent liver fibrosis development in affected individuals 4.

Sources cited
1
OTC catalyzes condensation of carbamoyl phosphate with L-ornithine to form L-citrulline; ensures ammonia detoxification by converting ammonia to urea
PMID: 2556444
2
OTC deficiency is the most common inherited disorder of the urea cycle, transmitted as X-linked trait; 341 mutations identified with varying clinical presentations
PMID: 16786505
3
High-throughput functional assay can distinguish pathogenic from benign variants and differentiate neonatal-onset from late-onset disease; neonatal onset presents with severe hyperammonemia progressing to cerebral edema and coma
PMID: 37146589
4
OTC deficiency leads to liver inflammation and fibrosis; AAV gene therapy prevents fibrosis development and corrects metabolic abnormalities
PMID: 28283349
⚠Limited data available β€” This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜21
ornithine carbamoyltransferase deficiencyOpen Targets
0.87Strong
genetic disorderOpen Targets
0.50Moderate
HyperammonemiaOpen Targets
0.39Weak
Abnormal circulating ornithine concentrationOpen Targets
0.34Weak
Protein avoidanceOpen Targets
0.34Weak
chronic granulomatous diseaseOpen Targets
0.27Weak
Global developmental delayOpen Targets
0.12Weak
ringed hair diseaseOpen Targets
0.10Suggestive
hypotrichosis 15Open Targets
0.10Suggestive
hypotrichosis simplexOpen Targets
0.10Suggestive
Alopecia-intellectual disability syndromeOpen Targets
0.09Suggestive
Alopecia universalisOpen Targets
0.09Suggestive
hypotrichosis 1Open Targets
0.08Suggestive
wooly hair, autosomal recessive 3Open Targets
0.08Suggestive
hypotrichosis 4Open Targets
0.08Suggestive
Barrett's esophagusOpen Targets
0.08Suggestive
uncombable hair syndromeOpen Targets
0.08Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
atrichia with papular lesionsOpen Targets
0.08Suggestive
pili bifurcatiOpen Targets
0.08Suggestive
Ornithine carbamoyltransferase deficiencyUniProt
Pathogenic Variants440
NM_000531.6(OTC):c.622G>A (p.Ala208Thr)Pathogenic
not provided|Ornithine carbamoyltransferase deficiency|Inborn genetic diseases|Likely inborn error of metabolism
β˜…β˜…β˜†β˜†2026β†’ Residue 208
NM_000531.6(OTC):c.118C>T (p.Arg40Cys)Pathogenic
Ornithine carbamoyltransferase deficiency|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 40
NM_000531.6(OTC):c.416T>C (p.Leu139Ser)Pathogenic
not provided|Ornithine carbamoyltransferase deficiency|Likely inborn error of metabolism
β˜…β˜…β˜†β˜†2026β†’ Residue 139
NM_000531.6(OTC):c.698C>T (p.Ala233Val)Likely pathogenic
not provided|Ornithine carbamoyltransferase deficiency
β˜…β˜…β˜†β˜†2026β†’ Residue 233
NM_000531.6(OTC):c.422G>A (p.Arg141Gln)Pathogenic
Ornithine carbamoyltransferase deficiency|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 141
NM_000531.6(OTC):c.626C>T (p.Ala209Val)Pathogenic
not provided|Ornithine carbamoyltransferase deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 209
NM_000531.6(OTC):c.119G>A (p.Arg40His)Pathogenic
Ornithine carbamoyltransferase deficiency|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 40
NM_000531.6(OTC):c.903A>T (p.Leu301Phe)Pathogenic
not provided|Ornithine carbamoyltransferase deficiency|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 301
NM_000531.6(OTC):c.275G>A (p.Arg92Gln)Pathogenic
not provided|Ornithine carbamoyltransferase deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 92
NM_000531.6(OTC):c.473C>T (p.Pro158Leu)Pathogenic
Ornithine carbamoyltransferase deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 158
NM_000531.6(OTC):c.958C>T (p.Arg320Ter)Pathogenic
not provided|Ornithine carbamoyltransferase deficiency|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 320
NM_000531.6(OTC):c.77G>A (p.Arg26Gln)Pathogenic
Ornithine carbamoyltransferase deficiency|not provided|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 26
NM_000531.6(OTC):c.386G>A (p.Arg129His)Pathogenic
Ornithine carbamoyltransferase deficiency|not provided|Squamous cell carcinoma of the head and neck
β˜…β˜…β˜†β˜†2025β†’ Residue 129
NM_000531.6(OTC):c.912G>T (p.Leu304Phe)Pathogenic
Ornithine carbamoyltransferase deficiency|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 304
NM_000531.6(OTC):c.482A>G (p.Asn161Ser)Pathogenic
not provided|Ornithine carbamoyltransferase deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 161
NM_000531.6(OTC):c.241T>C (p.Ser81Pro)Pathogenic
Ornithine carbamoyltransferase deficiency|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 81
NM_000531.6(OTC):c.158T>C (p.Ile53Thr)Pathogenic
not provided|Ornithine carbamoyltransferase deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 53
NC_000023.11:g.38352591C>APathogenic
Ornithine carbamoyltransferase deficiency|not provided
β˜…β˜…β˜†β˜†2025
NM_000531.6(OTC):c.674C>T (p.Pro225Leu)Pathogenic
Ornithine carbamoyltransferase deficiency|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 225
NM_000531.6(OTC):c.477T>G (p.Ile159Met)Likely pathogenic
Ornithine carbamoyltransferase deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 159
View on ClinVar β†—
Related Genes
ARG1Protein interaction99%ARG2Protein interaction99%OATProtein interaction99%GBE1Protein interaction98%NAGSProtein interaction98%ACY1Protein interaction97%
Tissue Expression6 tissues
Liver
100%
Lung
0%
Heart
0%
Brain
0%
Ovary
0%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
OTCARG1ARG2OATGBE1NAGSACY1
PROTEIN STRUCTURE
Preparing viewer…
PDB1OTH Β· 1.85 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.26Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.10 [0.05–0.26]
RankingsWhere OTC stands among ~20K protein-coding genes
  • #3,571of 20,598
    Most Researched131 Β· top quartile
  • #121of 5,498
    Most Pathogenic Variants440 Β· top 5%
  • #809of 17,882
    Most Constrained (LOEUF)0.26 Β· top 5%
Genes detectedOTC
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Thiamidol: A Breakthrough Innovation in the Treatment of Hyperpigmentation.
PMID: 40465503
J Drugs Dermatol Β· 2025
1.00
2
The functional impact of 1,570 individual amino acid substitutions in human OTC.
PMID: 37146589
Am J Hum Genet Β· 2023
0.90
3
[Paracetamol prenatal toxicity].
PMID: 10710957
Pol Merkur Lekarski Β· 1999
0.80
4
Mutations and polymorphisms in the human ornithine transcarbamylase (OTC) gene.
PMID: 16786505
Hum Mutat Β· 2006
0.70
5
Mutations and polymorphisms in the human ornithine transcarbamylase gene.
PMID: 11793468
Hum Mutat Β· 2002
0.60