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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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PADI6
peptidyl arginine deiminase 6
Chromosome 1 Β· 1p36.13
NCBI Gene: 353238Ensembl: ENSG00000276747.1HGNC: HGNC:20449UniProt: Q6TGC4
30PubMed Papers
1Diseases
0Drugs
20Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
cytoplasmcytoplasmic latticeprotein bindingidentical protein bindingOocyte/zygote/embryo maturation arrest 16
✦AI Summary

PADI6 (peptidyl arginine deiminase 6) is a maternal-effect protein essential for early embryonic development that functions as a structural constituent of cytoplasmic lattices in oocytes and preimplantation embryos 1. Unlike other peptidyl arginine deiminases, PADI6 lacks catalytic deiminase activity due to its inability to bind calcium 23. Cytoplasmic lattices serve as critical storage structures for maternal proteins, including ribosomal proteins and factors controlling epigenetic reprogramming, preventing their premature degradation or activation 1. PADI6 is a component of the subcortical maternal complex (SCMC) and controls both nuclear and cytoplasmic oocyte maturation processes 4. It regulates zygotic genome activation, DNA demethylation, and histone H3.3 incorporation during preimplantation development 45. Mutations in PADI6 cause female infertility through early embryo arrest at the two-cell or preimplantation stages, often accompanied by defective oocyte maturation and impaired epigenetic reprogramming 64. PADI6 variants are also associated with multilocus imprinting disturbances 4. The gene exhibits tissue-restricted expression primarily in ovary and testis 7, and represents an important molecular marker for determining oocyte quality and predicting reproductive outcomes 8.

Sources cited
1
PADI6 is a structural constituent of cytoplasmic lattices that store maternal proteins critical for embryonic development
PMID: 37922900
2
PADI6 lacks protein-arginine deiminase activity due to inability to bind calcium
PMID: 38656308
3
PADI6 cannot bind calcium and therefore lacks catalytic deiminase activity
PMID: 39286527
4
PADI6 controls nuclear and cytoplasmic oocyte maturation, zygotic genome activation, and DNA demethylation; mutations cause early embryo lethality and imprinting defects
PMID: 38453481
5
PADI6 interacts with MFN1 in the cytoplasmic lattice and regulates histone H3.3 incorporation during preimplantation development
PMID: 40091361
6
PADI6 variants cause female infertility through early embryo arrest with reduced PADI6 expression affecting protein function
PMID: 39644447
7
PADI6 mutations are among 16 identified genes causing oocyte maturation arrest, embryonic arrest, and represent molecular markers for oocyte quality
PMID: 33895934
8
PADI6 shows tissue-restricted expression primarily in ovary, testis, and peripheral blood leukocytes
PMID: 15087120
Disease Associationsβ“˜1
Oocyte/zygote/embryo maturation arrest 16UniProt
Pathogenic Variants20
NM_207421.4(PADI6):c.721C>T (p.Gln241Ter)Likely pathogenic
Oocyte/zygote/embryo maturation arrest 16
β˜…β˜†β˜†β˜†2024β†’ Residue 241
NM_207421.4(PADI6):c.1494+1G>TLikely pathogenic
Oocyte/zygote/embryo maturation arrest 16
β˜…β˜†β˜†β˜†2023
NM_207421.4(PADI6):c.1126dup (p.Ile376fs)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 376
NM_207421.4(PADI6):c.1894C>A (p.Pro632Thr)Likely pathogenic
Oocyte/zygote/embryo maturation arrest 16
β˜…β˜†β˜†β˜†2021β†’ Residue 632
NM_207421.4(PADI6):c.1618G>A (p.Gly540Arg)Likely pathogenic
Oocyte/zygote/embryo maturation arrest 16
β˜…β˜†β˜†β˜†2021β†’ Residue 540
NM_207421.4(PADI6):c.659C>A (p.Ala220Glu)Likely pathogenic
Oocyte/zygote/embryo maturation arrest 16
β˜…β˜†β˜†β˜†2021β†’ Residue 220
NM_207421.4(PADI6):c.1054C>T (p.Arg352Cys)Likely pathogenic
Oocyte/zygote/embryo maturation arrest 16
β˜…β˜†β˜†β˜†2021β†’ Residue 352
NM_207421.4(PADI6):c.633T>A (p.His211Gln)Pathogenic
Oocyte/zygote/embryo maturation arrest 16
β˜…β˜†β˜†β˜†2021β†’ Residue 211
NM_207421.4(PADI6):c.559dup (p.Thr187fs)Pathogenic
Oocyte/zygote/embryo maturation arrest 16
β˜…β˜†β˜†β˜†2021β†’ Residue 187
NM_207421.4(PADI6):c.1043_1044dup (p.Asp349fs)Pathogenic
Oocyte/zygote/embryo maturation arrest 16
β˜…β˜†β˜†β˜†2021β†’ Residue 349
NM_207421.4(PADI6):c.707dup (p.Leu237fs)Pathogenic
Oocyte/zygote/embryo maturation arrest 16
β˜…β˜†β˜†β˜†2021β†’ Residue 237
NM_207421.4(PADI6):c.5dup (p.Ser3fs)Pathogenic
Oocyte/zygote/embryo maturation arrest 16
β˜…β˜†β˜†β˜†2021β†’ Residue 3
NM_207421.4(PADI6):c.1996dup (p.Cys666fs)Pathogenic
Oocyte/zygote/embryo maturation arrest 16
β˜…β˜†β˜†β˜†2021β†’ Residue 666
NM_207421.4(PADI6):c.2009_2010del (p.Glu670fs)Pathogenic
Oocyte/zygote/embryo maturation arrest 16
β˜…β˜†β˜†β˜†2021β†’ Residue 670
NM_207421.4(PADI6):c.19C>T (p.Arg7Ter)Likely pathogenic
Oocyte/zygote/embryo maturation arrest 16
β˜…β˜†β˜†β˜†β†’ Residue 7
NM_207421.4(PADI6):c.434dup (p.Lys146fs)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†β†’ Residue 146
NM_207421.4(PADI6):c.1493del (p.Lys498fs)Likely pathogenic
PADI6-related disorder
β˜†β˜†β˜†β˜†2024β†’ Residue 498
NM_207421.4(PADI6):c.441dup (p.Trp148fs)Likely pathogenic
PADI6-related disorder
β˜†β˜†β˜†β˜†2024β†’ Residue 148
NM_207421.4(PADI6):c.1141C>T (p.Gln381Ter)Pathogenic
Oocyte/zygote/embryo maturation arrest 16
β˜†β˜†β˜†β˜†2023β†’ Residue 381
NM_207421.4(PADI6):c.970C>T (p.Gln324Ter)Pathogenic
Oocyte/zygote/embryo maturation arrest 16
β˜†β˜†β˜†β˜†2023β†’ Residue 324
View on ClinVar β†—
Related Genes
SFNProtein interaction90%OOEPProtein interaction72%NLRP2Protein interaction69%TLE6Protein interaction64%NLRP5Protein interaction64%KHDC3LProtein interaction63%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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PADI6SFNOOEPNLRP2TLE6NLRP5KHDC3L
PROTEIN STRUCTURE
Preparing viewer…
PDB4DAT Β· 1.40 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.99LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.81 [0.66–0.99]
RankingsWhere PADI6 stands among ~20K protein-coding genes
  • #11,994of 20,598
    Most Researched30
  • #2,206of 5,498
    Most Pathogenic Variants20
  • #9,582of 17,882
    Most Constrained (LOEUF)0.99
Genes detectedPADI6
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Genetic factors as potential molecular markers of human oocyte and embryo quality.
PMID: 33895934
J Assist Reprod Genet Β· 2021
1.00
2
PADI6: What we know about the elusive fifth member of the peptidyl arginine deiminase family.
PMID: 37778376
Philos Trans R Soc Lond B Biol Sci Β· 2023
0.90
3
Novel variants in PADI6 genes cause female infertility due to early embryo arrest.
PMID: 39644447
J Assist Reprod Genet Β· 2024
0.80
4
A maternal-effect
PMID: 38453481
Genes Dev Β· 2024
0.70
5
Mitofusin 1 Drives Preimplantation Development by Enhancing Chromatin Incorporation of Histone H3.3.
PMID: 40091361
Adv Sci (Weinh) Β· 2025
0.60