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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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PCGF3
polycomb group ring finger 3
Chromosome 4 · 4p16.3
NCBI Gene: 10336Ensembl: ENSG00000185619.20HGNC: HGNC:10066UniProt: B3KQ06
43PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
PcG protein complexnucleoplasmprotein bindingnucleusintelligencemathematical abilitytype 2 diabetes mellitusdiabetes mellitus
✦AI Summary

PCGF3 is a core component of Polycomb Repressive Complex 1 (PRC1), a multi-protein complex essential for maintaining transcriptional repression of developmental genes including Hox genes 1. Within PRC1, PCGF3 regulates RNF2 ubiquitin ligase activity to catalyze monoubiquitination of histone H2A at lysine 119 (H2AK119ub1), a repressive chr4 mark 2. PCGF3 functions redundantly with PCGF5 in X chromosome 4, where it mediates H2AK119ub1 deposition required for silencing one X chromosome 4 in females 3. PCGF3 interacts with regulatory proteins including AUTS2 isoforms and influences their transcriptional activity during neuronal differentiation 3. Loss of BAP1, which removes PRC1-mediated H2AK119ub1, results in excessive H2AK119ub1 accumulation predominantly through PCGF3/5-PRC1 complexes, disrupting normal Polycomb targeting 2. Clinically, PCGF3 dysregulation associates with multiple pathologies. It is upregulated in non-small cell lung cancer, promoting proliferation and migration via PI3K/AKT pathway activation and cell cycle regulation 4. miR-210-3p suppression of PCGF3 inhibits lung cancer development and metastasis 5. PCGF3 expression variants appear relevant to retinoblastoma progression 6 and HBV-related hepatocellular carcinoma, where miR-106b-3p targeting of PCGF3 suppresses cancer cell migration and invasion 7. PCGF3 variants also associate with Parkinson disease risk through splicing effects 8.

Sources cited
1
PCGF3/5-PRC1 complexes mediate H2AK119ub1 deposition and are central targets of BAP1 regulation
PMID: 34186021
2
PCGF3 interacts with AUTS2 isoforms and influences their transcriptional activity during neuronal differentiation
PMID: 30953002
3
PCGF3 is a PRC1 subunit component involved in H2AK119ub catalysis alongside other polycomb group factors
PMID: 32979540
4
PCGF3 is upregulated in NSCLC tissues, promotes cell proliferation and migration via PI3K/AKT pathway, and correlates with poor prognosis
PMID: 33485844
5
miR-210-3p targets PCGF3 to inhibit lung cancer development and metastasis
PMID: 34140779
6
PCGF3 variants showing disease-associated splicing effects are associated with Parkinson disease risk
PMID: 33523105
7
PCGF3 3' UTR variants impair gene expression in retinoblastoma progression
PMID: 36550020
8
miR-106b-3p directly targets PCGF3 to suppress HBV-HCC migration and invasion via PI3K/AKT pathway inhibition
PMID: 39529637
Disease Associationsⓘ20
intelligenceOpen Targets
0.46Moderate
mathematical abilityOpen Targets
0.41Moderate
type 2 diabetes mellitusOpen Targets
0.41Moderate
diabetes mellitusOpen Targets
0.38Weak
neurodegenerative diseaseOpen Targets
0.37Weak
schizophreniaOpen Targets
0.33Weak
liver diseaseOpen Targets
0.31Weak
essential tremorOpen Targets
0.20Weak
hepatocellular carcinomaOpen Targets
0.07Suggestive
attention deficit hyperactivity disorderOpen Targets
0.07Suggestive
hereditary attention deficit-hyperactivity disorderOpen Targets
0.06Suggestive
Syndactyly type 2Open Targets
0.05Suggestive
lung cancerOpen Targets
0.05Suggestive
familial isolated congenital aspleniaOpen Targets
0.05Suggestive
polydactyly of a triphalangeal thumbOpen Targets
0.05Suggestive
syndactyly type 4Open Targets
0.05Suggestive
attention deficit-hyperactivity disorder 8Open Targets
0.05Suggestive
intellectual disability, autosomal recessive 59Open Targets
0.05Suggestive
schizophrenia 15Open Targets
0.05Suggestive
Split hand-split foot malformationOpen Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
EZH2Protein interaction100%SUZ12Protein interaction100%CBX8Protein interaction100%HDAC2Protein interaction99%PCGF1Protein interaction99%PCGF6Protein interaction99%
Tissue Expression6 tissues
Ovary
100%
Bone Marrow
99%
Lung
65%
Liver
55%
Heart
46%
Brain
32%
Gene Interaction Network
Click a node to explore
PCGF3EZH2SUZ12CBX8HDAC2PCGF1PCGF6
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q3KNV8
View on AlphaFold ↗
RankingsWhere PCGF3 stands among ~20K protein-coding genes
  • #9,767of 20,598
    Most Researched43
Genes detectedPCGF3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
BAP1 enhances Polycomb repression by counteracting widespread H2AK119ub1 deposition and chromatin condensation.
PMID: 34186021
Mol Cell · 2021
1.00
2
AUTS2 isoforms control neuronal differentiation.
PMID: 30953002
Mol Psychiatry · 2021
0.90
3
Biological functions of chromobox (CBX) proteins in stem cell self-renewal, lineage-commitment, cancer and development.
PMID: 32979540
Bone · 2021
0.80
4
Identification of Candidate Parkinson Disease Genes by Integrating Genome-Wide Association Study, Expression, and Epigenetic Data Sets.
PMID: 33523105
JAMA Neurol · 2021
0.70
5
miR-210-3p Promotes Lung Cancer Development and Progression by Modulating USF1 and PCGF3.
PMID: 34140779
Onco Targets Ther · 2021
0.60