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25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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PDCD6
programmed cell death 6
Chromosome 5 · 5p15.33
NCBI Gene: 10016Ensembl: ENSG00000249915.10HGNC: HGNC:8765UniProt: A0A024QZ42
184PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
RESEARCH IMPACT
Trending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
endoplasmic reticulumcalcium ion bindingprotein bindingprotein-macromolecule adaptor activitysensorineural hearing lossdisorder of earatrial fibrillationeye color
✦AI Summary

PDCD6 (programmed cell death 6) is an evolutionarily conserved calcium-binding protein with multifaceted cellular functions across different subcellular compartments 1. The protein serves as a critical regulator of vesicular transport, specifically participating in COPII vesicle-dependent endoplasmic reticulum-to-Golgi transport 1. PDCD6 functions through calcium-dependent mechanisms, with its partner PDCD6IP/ALIX forming complexes that respond to calcium signals from damaged lysosomes 2. In stress responses, PDCD6 helps protect lysosomal membrane integrity through ESCRT-mediated mechanisms when calcium is released during osmotic stress 3. The protein also regulates innate immunity by negatively controlling LC3-associated phagocytosis through interaction with lactate dehydrogenase A (LDHA), modulating lactate metabolism and RUBCN lactylation 4. Additionally, PDCD6 participates in nutrient stress responses, where it contributes to lysosome-dependent microautophagy of ER exit sites along with ALG2 and ESCRT proteins 5. Clinically, PDCD6 shows disease relevance in cancer, where genetic polymorphisms are associated with cancer risk 6, and its expression correlates with angiogenesis regulation in prostate cancer 7. The protein's diverse roles in membrane dynamics, stress responses, and cellular homeostasis make it a significant target for therapeutic development.

Sources cited
1
PDCD6 is an evolutionarily conserved Ca2+-binding protein with multifaceted roles in different cellular compartments
PMID: 38436472
2
PDCD6 forms complexes with PDCD6IP/ALIX that respond to calcium signals from damaged lysosomes
PMID: 39962896
3
PDCD6 helps protect lysosomal membrane integrity through ESCRT-mediated mechanisms during osmotic stress
PMID: 38781205
4
PDCD6 negatively regulates LC3-associated phagocytosis through interaction with LDHA and modulation of lactate metabolism
PMID: 39578445
5
PDCD6 participates in lysosome-dependent microautophagy of ER exit sites with ALG2 and ESCRT proteins
PMID: 38593803
6
PDCD6 genetic polymorphisms are associated with cancer risk
PMID: 29872511
7
PDCD6 expression correlates with angiogenesis regulation in prostate cancer
PMID: 38659028
Disease Associationsⓘ20
sensorineural hearing lossOpen Targets
0.33Weak
disorder of earOpen Targets
0.33Weak
atrial fibrillationOpen Targets
0.28Weak
eye colorOpen Targets
0.18Weak
essential hypertensionOpen Targets
0.12Weak
hypertensionOpen Targets
0.12Weak
neoplasmOpen Targets
0.10Suggestive
atrial flutterOpen Targets
0.09Suggestive
lung cancerOpen Targets
0.08Suggestive
cervical cancerOpen Targets
0.08Suggestive
bladder transitional cell carcinomaOpen Targets
0.07Suggestive
colorectal carcinomaOpen Targets
0.07Suggestive
metabolic syndromeOpen Targets
0.07Suggestive
rectum cancerOpen Targets
0.07Suggestive
breast cancerOpen Targets
0.07Suggestive
cancerOpen Targets
0.06Suggestive
colorectal cancerOpen Targets
0.06Suggestive
ovarian cancerOpen Targets
0.05Suggestive
hepatocellular carcinomaOpen Targets
0.05Suggestive
breast carcinomaOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CUL3Protein interaction100%CEP55Protein interaction100%CHMP4CProtein interaction99%RBX1Protein interaction99%HEBP2Protein interaction99%CHMP4AProtein interaction98%
Tissue Expression6 tissues
Liver
100%
Brain
95%
Ovary
93%
Lung
79%
Bone Marrow
63%
Heart
57%
Gene Interaction Network
Click a node to explore
PDCD6CUL3CEP55CHMP4CRBX1HEBP2CHMP4A
PROTEIN STRUCTURE
Preparing viewer…
PDB2ZND · 1.70 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.85LoF Tolerant
pLIⓘ
0.17Tolerant
Observed/Expected LoF0.45 [0.26–0.85]
RankingsWhere PDCD6 stands among ~20K protein-coding genes
  • #2,353of 20,598
    Most Researched184 · top quartile
  • #7,318of 17,882
    Most Constrained (LOEUF)0.85
Genes detectedPDCD6
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
PDCD6 regulates lactate metabolism to modulate LC3-associated phagocytosis and antibacterial defense.
PMID: 39578445
Nat Commun · 2024
1.00
2
Multifaceted roles of PDCD6 both within and outside the cell.
PMID: 38436472
J Cell Physiol · 2024
0.90
3
Calcium release from damaged lysosomes triggers stress granule formation for cell survival.
PMID: 39962896
Autophagy · 2025
0.80
4
The Contribution of PDCD6 Polymorphisms to Oral Cancer Risk.
PMID: 35732318
Cancer Genomics Proteomics · 2022
0.76
5
COPII with ALG2 and ESCRTs control lysosome-dependent microautophagy of ER exit sites.
PMID: 38593803
Dev Cell · 2024
0.70