HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PDE6A
phosphodiesterase 6A
Chromosome 5 Β· 5q32
NCBI Gene: 5145Ensembl: ENSG00000132915.12HGNC: HGNC:8785UniProt: F1T0K3
44PubMed Papers
21Diseases
2Drugs
125Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
RESEARCH IMPACT
Variant-Rich
CLINICAL
FDA Approved TargetOMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
3',5'-cyclic-GMP phosphodiesterase activityvisual perceptionrod photoreceptor phosphodiesterase 6 complexphotoreceptor outer segment membraneretinitis pigmentosaretinitis pigmentosa 43Retinal dystrophycoronary artery disease
✦AI Summary

PDE6A encodes a rod-specific phosphodiesterase that catalyzes hydrolysis of cyclic guanosine monophosphate (cGMP), playing a central role in phototransductionβ€”the conversion of photons into electrical signals in retinal photoreceptors 1. This enzyme participates in signal transmission and amplification within the visual cascade 1. Biallelic PDE6A variants cause retinitis pigmentosa type 43 (RP43), accounting for approximately 2-5% of autosomal recessive retinitis pigmentosa cases 23. Clinical studies of 57 PDE6A-RP patients revealed mild-to-moderate visual impairment in 90%, with mean best-corrected visual acuity of 0.43 logMAR and highly variable visual field preservation 4. Disease severity correlates with specific variants, with c.998+1G>A showing more severe phenotype than c.304C>A 4. Gene supplementation therapy using AAV8-PDE6A vectors restored rod vision and preserved photoreceptor morphology in preclinical canine models 3. However, a phase I/IIa human trial of subretinal AAV8.hPDE6A showed no significant visual function improvement over one year and revealed safety concerns including central retinal thinning and visual acuity decline 5, contrasting with preclinical efficacy. Alternative therapeutic approaches, such as transcriptional activation of compensatory PDE6B via CRISPR systems, demonstrated promise in rescuing photoreceptor degeneration in mouse models 6.

Sources cited
1
PDE6A catalyzes hydrolysis of cGMP and participates in visual signal transmission and amplification
PMID: 20940301
2
PDE6 genes account for 2-5% of autosomal recessive retinitis pigmentosa cases
PMID: 30578498
3
PDE6A mutations cause RP43, responsible for ~4% of autosomal recessive RP; AAV8-PDE6A gene supplementation restored rod vision and preserved photoreceptor morphology in canine models
PMID: 29212382
4
Clinical phenotyping of 57 PDE6A-RP patients showed mild-to-moderate impairment in 90%, variable visual fields, and genotype-phenotype correlations with variant c.998+1G>A showing more severe phenotype than c.304C>A
PMID: 33057649
5
Phase I/IIa human trial of subretinal AAV8.hPDE6A showed no significant visual function improvement and safety concerns including central retinal thinning and visual acuity decline
PMID: 40825661
6
Transcriptional activation of PDE6B via dCasMINI-mediated CRISPR in Pde6a-deficient mice rescued photoreceptor degeneration and visual function
PMID: 39693439
Disease Associationsβ“˜21
retinitis pigmentosaOpen Targets
0.79Strong
retinitis pigmentosa 43Open Targets
0.71Strong
Retinal dystrophyOpen Targets
0.57Moderate
coronary artery diseaseOpen Targets
0.54Moderate
strokeOpen Targets
0.54Moderate
genetic disorderOpen Targets
0.47Moderate
autosomal recessive retinitis pigmentosaOpen Targets
0.42Moderate
Posterior column ataxia - retinitis pigmentosaOpen Targets
0.42Moderate
PDE6A-related retinopathyOpen Targets
0.40Weak
cardiovascular diseaseOpen Targets
0.39Weak
eye diseaseOpen Targets
0.37Weak
hypertensionOpen Targets
0.37Weak
intermittent vascular claudicationOpen Targets
0.37Weak
Recurrent thrombophlebitisOpen Targets
0.37Weak
chronic kidney diseaseOpen Targets
0.35Weak
Leber congenital amaurosisOpen Targets
0.33Weak
Hepatitis, AlcoholicOpen Targets
0.33Weak
Neonatal sepsisOpen Targets
0.32Weak
non-alcoholic steatohepatitisOpen Targets
0.31Weak
COVID-19Open Targets
0.29Weak
Retinitis pigmentosa 43UniProt
Pathogenic Variants125
NM_000440.3(PDE6A):c.1955_1974dup (p.Ile659fs)Pathogenic
not provided|Retinal dystrophy|Retinitis pigmentosa 43
β˜…β˜…β˜†β˜†2025β†’ Residue 659
NM_000440.3(PDE6A):c.305G>A (p.Arg102His)Pathogenic
not provided|Retinitis pigmentosa 43|Retinal dystrophy
β˜…β˜…β˜†β˜†2025β†’ Residue 102
NM_000440.3(PDE6A):c.627+2T>GPathogenic
Retinitis pigmentosa|Retinal dystrophy|Retinitis pigmentosa 43
β˜…β˜…β˜†β˜†2025
NM_000440.3(PDE6A):c.304C>T (p.Arg102Cys)Pathogenic
not provided|Retinitis pigmentosa
β˜…β˜…β˜†β˜†2025β†’ Residue 102
NM_000440.3(PDE6A):c.1630C>T (p.Arg544Trp)Pathogenic
Retinitis pigmentosa|Retinal dystrophy|not provided|Retinitis pigmentosa 43
β˜…β˜…β˜†β˜†2025β†’ Residue 544
NM_000440.3(PDE6A):c.1407+1G>CPathogenic
Retinal dystrophy|not provided|Retinitis pigmentosa 43
β˜…β˜…β˜†β˜†2025
NM_000440.3(PDE6A):c.2332_2335del (p.Asp778fs)Pathogenic
not provided|Retinitis pigmentosa|Retinitis pigmentosa 43|Retinal dystrophy
β˜…β˜…β˜†β˜†2025β†’ Residue 778
NM_000440.3(PDE6A):c.2302G>T (p.Glu768Ter)Pathogenic
Retinal dystrophy|Retinitis pigmentosa 43|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 768
NM_000440.3(PDE6A):c.998+1G>APathogenic
not provided|Retinitis pigmentosa|Retinitis pigmentosa 43|Retinal dystrophy
β˜…β˜…β˜†β˜†2025
NM_000440.3(PDE6A):c.1684C>T (p.Arg562Trp)Pathogenic
Retinitis pigmentosa|not provided|Retinitis pigmentosa 43|Retinal dystrophy
β˜…β˜…β˜†β˜†2025β†’ Residue 562
NM_000440.3(PDE6A):c.2053G>A (p.Val685Met)Pathogenic
Retinitis pigmentosa 43|not provided|Retinal dystrophy
β˜…β˜…β˜†β˜†2025β†’ Residue 685
NM_000440.3(PDE6A):c.1957C>T (p.Arg653Ter)Pathogenic
Retinitis pigmentosa|Inborn genetic diseases|not provided|Retinitis pigmentosa 43|Retinal dystrophy
β˜…β˜…β˜†β˜†2025β†’ Residue 653
NM_000440.3(PDE6A):c.2275-1G>APathogenic
not provided|Retinitis pigmentosa 43
β˜…β˜…β˜†β˜†2025
NM_000440.3(PDE6A):c.1620+1G>APathogenic
Retinitis pigmentosa|Retinal dystrophy|not provided
β˜…β˜…β˜†β˜†2025
NM_000440.3(PDE6A):c.769C>T (p.Arg257Ter)Pathogenic
Retinitis pigmentosa|not provided|Retinal dystrophy|Retinitis pigmentosa 43
β˜…β˜…β˜†β˜†2025β†’ Residue 257
NM_000440.3(PDE6A):c.1263+1G>TPathogenic
Retinal dystrophy|not provided
β˜…β˜…β˜†β˜†2025
NM_000440.3(PDE6A):c.2T>C (p.Met1Thr)Likely pathogenic
not provided|Retinitis pigmentosa 43
β˜…β˜…β˜†β˜†2025β†’ Residue 1
NM_000440.3(PDE6A):c.1685G>A (p.Arg562Gln)Likely pathogenic
Retinitis pigmentosa 43|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 562
NM_000440.3(PDE6A):c.1724T>C (p.Leu575Pro)Pathogenic
not provided|Retinitis pigmentosa 43
β˜…β˜…β˜†β˜†2024β†’ Residue 575
NM_000440.3(PDE6A):c.1749C>G (p.Tyr583Ter)Pathogenic
Retinitis pigmentosa 43|Retinitis pigmentosa|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 583
View on ClinVar β†—
Drug Targets2
DIPYRIDAMOLEApproved
3',5'-cyclic phosphodiesterase inhibitor
coronary artery disease
PENTOXIFYLLINEApproved
Adenosine A2 receptor antagonist
cardiovascular disease
Related Genes
CNGA3Protein interaction98%RHOProtein interaction94%GUK1Protein interaction92%GMPRProtein interaction91%APRTProtein interaction91%GMPSProtein interaction90%
Tissue Expression6 tissues
Brain
100%
Ovary
49%
Heart
44%
Lung
41%
Liver
33%
Bone Marrow
7%
Gene Interaction Network
Click a node to explore
PDE6ACNGA3RHOGUK1GMPRAPRTGMPS
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt P16499
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.89LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.73 [0.60–0.89]
RankingsWhere PDE6A stands among ~20K protein-coding genes
  • #9,631of 20,598
    Most Researched44
  • #671of 1,025
    FDA-Approved Drug Targets2
  • #632of 5,498
    Most Pathogenic Variants125 Β· top quartile
  • #7,941of 17,882
    Most Constrained (LOEUF)0.89
Genes detectedPDE6A
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
PMID: 20301590
1.00
2
Monogenic Retinal Diseases Associated With Genes Encoding Phototransduction Proteins: A Review.
PMID: 40013354
Clin Exp Ophthalmol Β· 2025
0.90
3
Retinitis Pigmentosa (Non-syndromic).
PMID: 30578498
Adv Exp Med Biol Β· 2018
0.80
4
Clinical Phenotype and Course of PDE6A-Associated Retinitis Pigmentosa Disease, Characterized in Preparation for a Gene Supplementation Trial.
PMID: 33057649
JAMA Ophthalmol Β· 2020
0.70
5
Gene Supplementation Rescues Rod Function and Preserves Photoreceptor and Retinal Morphology in Dogs, Leading the Way Toward Treating Human
PMID: 29212382
Hum Gene Ther Β· 2017
0.60