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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PDYN
prodynorphin
Chromosome 20 Β· 20p13
NCBI Gene: 5173Ensembl: ENSG00000101327.9HGNC: HGNC:8820UniProt: P01213
107PubMed Papers
21Diseases
0Drugs
2Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
hippocampal mossy fiber to CA3 synapseneuronal dense core vesicleprotein bindingplasma membranespinocerebellar ataxia type 23rectosigmoid junction neoplasmneurodegenerative diseasegenetic disorder
✦AI Summary

PDYN (prodynorphin) encodes a precursor protein that is processed to generate dynorphin opioid peptides, which function as endogenous ligands for kappa opioid receptors (KORs) 1. The gene belongs to the opioid/orphanin gene family and produces neuropeptides with typical opioid activity 2. PDYN expression is regulated by activity-dependent transcriptional mechanisms, with neuronal stimulation promoting its transcription through conserved enhancer elements that undergo chr20 remodeling 3. The gene is also subject to transcriptional repression by REST in human neuroblastoma cells and adult brain tissue 4. Functionally, dynorphin peptides from PDYN-expressing neurons modulate social behaviors and emotional states. Specifically, dynorphin release from dorsal raphe PDYN neurons activates KORs in the nucleus accumbens, inhibiting serotonin release during social interactions and contributing to social deficits during opioid withdrawal 5. PDYN genetic variants are associated with alcohol use disorder risk and negative emotional drinking behaviors 1, methamphetamine use disorder 6, and depression severity 7. The gene shows altered expression in various neuropsychiatric conditions, suggesting its critical role in mood regulation and addiction vulnerability through modulation of the dynorphin-KOR system.

Sources cited
1
PDYN generates dynorphin peptides that are endogenous KOR ligands and genetic variants associate with alcohol dependence and negative craving
PMID: 23101464
2
PDYN belongs to opioid/orphanin gene family and produces peptides with opioid activity
PMID: 31421696
3
PDYN expression is regulated by activity-dependent transcription through conserved enhancer elements
PMID: 37333110
4
PDYN is transcriptionally repressed by REST in human cells and brain tissue
PMID: 25220237
5
Dynorphin from dorsal raphe PDYN neurons modulates social behavior through NAc KOR activation and serotonin inhibition
PMID: 36202097
6
PDYN polymorphisms associate with methamphetamine use disorder
PMID: 32597371
7
PDYN variants influence depression severity in alcohol use disorder patients
PMID: 37177778
Disease Associationsβ“˜21
spinocerebellar ataxia type 23Open Targets
0.79Strong
rectosigmoid junction neoplasmOpen Targets
0.31Weak
neurodegenerative diseaseOpen Targets
0.26Weak
genetic disorderOpen Targets
0.19Weak
autosomal dominant cerebellar ataxiaOpen Targets
0.18Weak
thrombocytopenia 4Open Targets
0.16Weak
hemorrhagic diseaseOpen Targets
0.14Weak
AnxietyOpen Targets
0.09Suggestive
polycystic ovary syndromeOpen Targets
0.08Suggestive
alcohol dependenceOpen Targets
0.07Suggestive
DyskinesiaOpen Targets
0.06Suggestive
attention deficit hyperactivity disorderOpen Targets
0.06Suggestive
ThrombocytopeniaOpen Targets
0.06Suggestive
Huntington diseaseOpen Targets
0.06Suggestive
FTH1-related iron overloadOpen Targets
0.05Suggestive
hemochromatosis type 5Open Targets
0.05Suggestive
autosomal dominant macrothrombocytopeniaOpen Targets
0.05Suggestive
microcytic anemia with liver iron overloadOpen Targets
0.05Suggestive
Adult-onset autosomal recessive sideroblastic anemiaOpen Targets
0.05Suggestive
macrothrombocytopenia, isolated, 2, autosomal dominantOpen Targets
0.05Suggestive
Spinocerebellar ataxia 23UniProt
Pathogenic Variants2
NM_024411.5(PDYN):c.634C>T (p.Arg212Trp)Likely pathogenic
Spinocerebellar ataxia type 23
β˜…β˜†β˜†β˜†2021β†’ Residue 212
NM_024411.5(PDYN):c.643C>T (p.Arg215Cys)Pathogenic
Spinocerebellar ataxia type 23
β˜†β˜†β˜†β˜†2010β†’ Residue 215
View on ClinVar β†—
Related Genes
GRIN3AProtein interaction100%PENKProtein interaction98%KNG1Protein interaction98%OPRD1Protein interaction98%OPRM1Protein interaction98%TAC3Protein interaction97%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
2%
Ovary
0%
Liver
0%
Heart
0%
Lung
0%
Gene Interaction Network
Click a node to explore
PDYNGRIN3APENKKNG1OPRD1OPRM1TAC3
PROTEIN STRUCTURE
Preparing viewer…
PDB8VJU Β· 1.99 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.77LoF Tolerant
pLIβ“˜
0.49Tolerant
Observed/Expected LoF0.37 [0.19–0.77]
RankingsWhere PDYN stands among ~20K protein-coding genes
  • #4,454of 20,598
    Most Researched107 Β· top quartile
  • #4,307of 5,498
    Most Pathogenic Variants2
  • #6,224of 17,882
    Most Constrained (LOEUF)0.77
Genes detectedPDYN
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Temporally specific gene expression and chromatin remodeling programs regulate a conserved
PMID: 37333110
bioRxiv Β· 2023
1.00
2
Temporally specific gene expression and chromatin remodeling programs regulate a conserved
PMID: 37938195
Elife Β· 2023
0.90
3
Evolution of proopiomelanocortin.
PMID: 31421696
Vitam Horm Β· 2019
0.80
4
Prodynorphin (PDYN) gene polymorphisms in Turkish patients with methamphetamine use disorder, changes in PDYN serum levels in withdrawal and the relationship between PDYN, temperament and depression.
PMID: 32597371
J Ethn Subst Abuse Β· 2022
0.70
5
Effect of PDYN and OPRK1 polymorphisms on the risk of alcohol use disorder and the intensity of depressive symptoms.
PMID: 37177778
Alcohol Alcohol Β· 2023
0.60