HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
GRIN3A
glutamate ionotropic receptor NMDA type subunit 3A
Chromosome 9 · 9q31.1
NCBI Gene: 116443Ensembl: ENSG00000198785.7HGNC: HGNC:16767UniProt: Q8TCU5
98PubMed Papers
20Diseases
28Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Ion ChannelReceptorTransporter
CLINICAL
FDA Approved Target
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
NMDA selective glutamate receptor complexsynapseprotein bindingneurotransmitter receptor complexAlzheimer diseaseParkinson diseaseinfluenzainfection
✦AI Summary

GRIN3A encodes the GluN3A subunit of N-methyl-D-aspartate (NMDA) receptors, functioning as a component of heterotetrameric, ligand-gated cation channels with low calcium permeability and reduced voltage-dependent magnesium block 1. The protein forms two distinct receptor complexes: conventional glutamatergic receptors with GluN1 and GluN2 subunits activated by glycine and L-glutamate, and excitatory glycinergic receptors (eGlyRs) with GluN1 alone activated by glycine or D-serine 2. During neural development, GluN3A participates in synaptic refinement by restricting spine maturation and growth through competition with GIT1 interaction with ARHGEF7, thereby limiting RAC1 activation at inactive synapses. Each GluN3 subunit confers differential channel properties including activation kinetics, desensitization, and pH sensitivity. Genetic variations in GRIN3A are associated with multiple neuropsychiatric and systemic conditions. A missense variant (p.R480G) shows significant association with schizophrenia 3, while polymorphisms correlate with postpartum depressive symptoms 4 and postoperative delirium 5. GRIN3A variants also associate with coronary artery aneurysm complications in Kawasaki disease 6, cognitive decline in APOE-ε4 carriers 7, and quality of life in methadone maintenance therapy 8. Elevated GRIN3A expression contributes to abnormal nerve proliferation in macrodactyly 9. eGlyRs concentrated in emotional-response-regulating brain regions represent emerging therapeutic targets in neuropsychiatry.

Sources cited
1
GRIN3A forms excitatory glycinergic receptor complexes with GluN1 activated by glycine binding
PMID: 38598639
2
GluN3A forms excitatory glycine receptors (eGlyRs) in specific brain regions regulating emotional responses and neuronal excitability
PMID: 37248111
3
A missense variant in GRIN3A (p.R480G) is associated with schizophrenia with significant effect size
PMID: 23237318
4
GRIN3A gene polymorphisms are associated with postpartum depressive symptoms in parturients
PMID: 36898314
5
GRIN3A 3723 G/A polymorphism is associated with postoperative delirium in cardiac surgery patients
PMID: 25041634
6
GRIN3A rs7849782 genetic variant is associated with coronary artery aneurysm complications in Kawasaki disease
PMID: 24278430
7
GRIN3A is linked to cognitive decline in APOE-ε4 carriers through GWAS analysis
PMID: 41720779
8
GRIN3A genetic polymorphisms impact quality of life in methadone maintenance therapy population
PMID: 30059533
9
GRIN3A is upregulated and promotes nerve overgrowth in macrodactyly through cAMP-protein kinase A signaling
PMID: 27840953
Disease Associationsⓘ20
Alzheimer diseaseOpen Targets
0.61Moderate
Parkinson diseaseOpen Targets
0.60Moderate
influenzaOpen Targets
0.60Moderate
infectionOpen Targets
0.60Moderate
alcohol dependenceOpen Targets
0.59Moderate
major depressive disorderOpen Targets
0.58Moderate
dementiaOpen Targets
0.58Moderate
cerebral atherosclerosisOpen Targets
0.56Moderate
postencephalitic Parkinson diseaseOpen Targets
0.56Moderate
secondary Parkinson diseaseOpen Targets
0.56Moderate
depressive disorderOpen Targets
0.53Moderate
epilepsyOpen Targets
0.53Moderate
PainOpen Targets
0.53Moderate
TinnitusOpen Targets
0.40Moderate
schizophreniaOpen Targets
0.39Weak
bipolar disorderOpen Targets
0.38Weak
cancerOpen Targets
0.38Weak
multiple sclerosisOpen Targets
0.38Weak
treatment resistant depressionOpen Targets
0.38Weak
neuropathic painOpen Targets
0.37Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Drug Targets28
ACAMPROSATEApproved
Glutamate [NMDA] receptor antagonist
alcohol dependence
ACAMPROSATE CALCIUMApproved
Glutamate [NMDA] receptor antagonist
alcohol dependence
AMANTADINEApproved
Matrix protein 2 inhibitor
influenza
AMANTADINE HYDROCHLORIDEApproved
Matrix protein 2 inhibitor
influenza
APIMOSTINELPhase II
Glutamate [NMDA] receptor partial agonist
major depressive disorder
AV-101Phase III
Glutamate [NMDA] receptor antagonist
pulmonary arterial hypertension
AZD8108Phase I
Glutamate [NMDA] receptor antagonist
CNS-5161Phase II
Glutamate [NMDA] receptor blocker
neuropathic pain
DELUCEMINEPhase I
Glutamate [NMDA] receptor antagonist
depressive disorder
ESKETAMINEApproved
Glutamate [NMDA] receptor negative allosteric modulator
major depressive disorder
ESKETAMINE HYDROCHLORIDEApproved
Glutamate [NMDA] receptor negative allosteric modulator
major depressive disorder
FELBAMATEApproved
Glutamate [NMDA] receptor antagonist
epilepsy
GW468816Phase II
Glutamate [NMDA] receptor antagonist
nicotine dependence
INDANTADOLPhase II
Glutamate [NMDA] receptor antagonist
neuropathic pain
KETAMINEApproved
Glutamate [NMDA] receptor negative allosteric modulator
KETAMINE HYDROCHLORIDEPhase III
Glutamate [NMDA] receptor negative allosteric modulator
cancer
LANICEMINEPhase II
Glutamate [NMDA] receptor blocker
major depressive disorder
MEMANTINEApproved
Glutamate [NMDA] receptor negative allosteric modulator
Alzheimer disease
MEMANTINE HYDROCHLORIDEApproved
Glutamate [NMDA] receptor negative allosteric modulator
Alzheimer disease
NEBOGLAMINEPhase II
Glutamate [NMDA] receptor positive allosteric modulator
cocaine dependence
NERAMEXANEPhase III
Neuronal acetylcholine receptor; alpha9/alpha10 antagonist
Alzheimer disease
NERAMEXANE MESYLATEPhase III
Neuronal acetylcholine receptor; alpha9/alpha10 antagonist
Tinnitus
ORPHENADRINEApproved
Glutamate [NMDA] receptor antagonist
Parkinson disease
ORPHENADRINE CITRATEApproved
Glutamate [NMDA] receptor antagonist
Pain
ORPHENADRINE HYDROCHLORIDEApproved
Histamine H1 receptor antagonist
Parkinson disease
PERZINFOTELPhase II
Glutamate [NMDA] receptor antagonist
diabetic neuropathy
RALFINAMIDEPhase III
Glutamate [NMDA] receptor antagonist
neuropathic pain
RAPASTINELPhase III
Glutamate [NMDA] receptor partial agonist
major depressive disorder
Related Genes
DLG4Protein interaction100%PDYNProtein interaction100%GRIA1Protein interaction87%CNIH2Protein interaction84%SHISA9Protein interaction82%CNIH3Protein interaction80%
Tissue Expression6 tissues
Brain
100%
Heart
33%
Liver
17%
Ovary
16%
Bone Marrow
15%
Lung
8%
Gene Interaction Network
Click a node to explore
GRIN3ADLG4PDYNGRIA1CNIH2SHISA9CNIH3
PROTEIN STRUCTURE
Preparing viewer…
PDB8UUE · 3.96 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.65LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.50 [0.39–0.65]
RankingsWhere GRIN3A stands among ~20K protein-coding genes
  • #4,884of 20,598
    Most Researched98 · top quartile
  • #121of 1,025
    FDA-Approved Drug Targets13 · top quartile
  • #4,684of 17,882
    Most Constrained (LOEUF)0.65
Genes detectedGRIN3A
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Correlations between GRIN2B and GRIN3A gene polymorphisms and postpartum depressive symptoms in Chinese parturients undergoing cesarean section: A prospective cohort study.
PMID: 36898314
J Psychosom Res · 2023
1.00
2
Genetic modifiers of APOE-ε4-associated cognitive decline.
PMID: 41720779
Nat Commun · 2026
0.90
3
Association between GRIN3A gene polymorphism in Kawasaki disease and coronary artery aneurysms in Taiwanese children.
PMID: 24278430
PLoS One · 2013
0.80
4
The assessment of the T102C polymorphism of the 5HT2a receptor gene, 3723G/A polymorphism of the NMDA receptor 3A subunit gene (GRIN3A) and 421C/A polymorphism of the NMDA receptor 2B subunit gene (GRIN2B) among cardiac surgery patients with and without delirium.
PMID: 25041634
Gen Hosp Psychiatry · 2014
0.70
5
Excitatory GluN1/GluN3A glycine receptors (eGlyRs) in brain signaling.
PMID: 37248111
Trends Neurosci · 2023
0.60