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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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PHF19
PHD finger protein 19
Chromosome 9 · 9q33.2
NCBI Gene: 26147Ensembl: ENSG00000119403.15HGNC: HGNC:24566UniProt: A0A087X169
50PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
negative regulation of gene expression, epigeneticprotein bindinghistone H3K36me3 reader activityESC/E(Z) complexatopic eczemaoptic atrophyovarian neoplasmrheumatoid arthritis
✦AI Summary

PHF19 (PHD finger protein 19) is a polycomb group protein that functions as an H3K36me3 reader and PRC2 complex recruiter, playing critical roles in epigenetic gene regulation. Mechanistically, PHF19 binds histone H3 trimethylated at lysine 36 (H3K36me3) and recruits the PRC2 complex to enhance H3K27me3 methylation activity, facilitating the transition from active to repressed chr9 states 1. In embryonic stem cells, PHF19 recruits histone demethylases (RIOX1/KDM2B) to remove H3K36me3 marks, enabling PRC2-mediated H3K27me3 deposition and de novo gene silencing 2. PHF19 dysregulation is implicated in multiple malignancies: elevated PHF19 expression drives colorectal cancer tumorigenesis via super-enhancer activation 3, associates with relapsed/refractory multiple myeloma and poor prognosis 4, and promotes glioma cell proliferation through EZH2 hyperactivation 5. In prostate cancer, PHF19 long isoform (PHF19L) forms m6A-dependent condensates with YTHDC1 that paradoxically switch EZH2 function from gene suppression to activation, promoting cancer progression and therapy resistance 6. Additionally, PHF19 promotes cardiac hypertrophy by epigenetically repressing SIRT2 7 and regulates melanoma phenotype switching between proliferative and invasive states via Akt signaling 8. These findings establish PHF19 as a multifunctional epigenetic regulator with significant disease relevance across solid and hematological malignancies.

Sources cited
1
Mechanistically, PHF19 binds histone H3 trimethylated at lysine 36 (H3K36me3) and recruits the PRC2 complex to enhance H3K27me3 methylation activity, facilitating the transition from active to repressed chr9 states .
PMID: 23104054
2
In embryonic stem cells, PHF19 recruits histone demethylases (RIOX1/KDM2B) to remove H3K36me3 marks, enabling PRC2-mediated H3K27me3 deposition and de novo gene silencing .
PMID: 23160351
3
PHF19 dysregulation is implicated in multiple malignancies: elevated PHF19 expression drives colorectal cancer tumorigenesis via super-enhancer activation , associates with relapsed/refractory multiple myeloma and poor prognosis , and promotes glioma cell proliferation through EZH2 hyperactivation .
PMID: 34737287
4
PHF19 dysregulation is implicated in multiple malignancies: elevated PHF19 expression drives colorectal cancer tumorigenesis via super-enhancer activation , associates with relapsed/refractory multiple myeloma and poor prognosis , and promotes glioma cell proliferation through EZH2 hyperactivation .
PMID: 38755140
5
PHF19 dysregulation is implicated in multiple malignancies: elevated PHF19 expression drives colorectal cancer tumorigenesis via super-enhancer activation , associates with relapsed/refractory multiple myeloma and poor prognosis , and promotes glioma cell proliferation through EZH2 hyperactivation .
PMID: 30131250
6
In prostate cancer, PHF19 long isoform (PHF19L) forms m6A-dependent condensates with YTHDC1 that paradoxically switch EZH2 function from gene suppression to activation, promoting cancer progression and therapy resistance .
PMID: 41129231
7
Additionally, PHF19 promotes cardiac hypertrophy by epigenetically repressing SIRT2 and regulates melanoma phenotype switching between proliferative and invasive states via Akt signaling .
PMID: 33611744
8
Additionally, PHF19 promotes cardiac hypertrophy by epigenetically repressing SIRT2 and regulates melanoma phenotype switching between proliferative and invasive states via Akt signaling .
PMID: 22487681
Disease Associationsⓘ20
atopic eczemaOpen Targets
0.34Weak
optic atrophyOpen Targets
0.31Weak
ovarian neoplasmOpen Targets
0.27Weak
rheumatoid arthritisOpen Targets
0.27Weak
deep vein thrombosisOpen Targets
0.15Weak
allergic rhinitisOpen Targets
0.15Weak
Eczematoid dermatitisOpen Targets
0.12Weak
respiratory system diseaseOpen Targets
0.11Weak
asthmaOpen Targets
0.10Suggestive
immune system diseaseOpen Targets
0.10Suggestive
Miyoshi myopathyOpen Targets
0.09Suggestive
Abnormal thrombosisOpen Targets
0.09Suggestive
allergic diseaseOpen Targets
0.09Suggestive
neoplasmOpen Targets
0.09Suggestive
cancerOpen Targets
0.08Suggestive
atopic asthmaOpen Targets
0.08Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
colorectal carcinomaOpen Targets
0.08Suggestive
ACPA-positive rheumatoid arthritisOpen Targets
0.08Suggestive
ovarian cancerOpen Targets
0.08Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
KDM2BProtein interaction100%CBX4Protein interaction99%H3C13Protein interaction95%AEBP2Protein interaction95%RBBP7Protein interaction94%RIOX1Protein interaction94%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
92%
Brain
74%
Lung
55%
Heart
48%
Liver
13%
Gene Interaction Network
Click a node to explore
PHF19KDM2BCBX4H3C13AEBP2RBBP7RIOX1
PROTEIN STRUCTURE
Preparing viewer…
PDB6WAU · 1.75 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.47Moderately Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.32 [0.21–0.47]
RankingsWhere PHF19 stands among ~20K protein-coding genes
  • #8,860of 20,598
    Most Researched50
  • #2,726of 17,882
    Most Constrained (LOEUF)0.47 · top quartile
Genes detectedPHF19
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Genome-wide profiling in colorectal cancer identifies PHF19 and TBC1D16 as oncogenic super enhancers.
PMID: 34737287
Nat Commun · 2021
1.00
2
1q amplification and PHF19 expressing high-risk cells are associated with relapsed/refractory multiple myeloma.
PMID: 38755140
Nat Commun · 2024
0.90
3
A PHF19-YTHDC1 condensate switches EZH2-mediated gene suppression to activation for prostate cancer progression.
PMID: 41129231
Proc Natl Acad Sci U S A · 2025
0.80
4
microRNA-124a suppresses PHF19 over-expression, EZH2 hyper-activation, and aberrant cell proliferation in human glioma.
PMID: 30131250
Biochem Biophys Res Commun · 2018
0.70
5
PHD Finger Protein 19 Promotes Cardiac Hypertrophy via Epigenetically Regulating SIRT2.
PMID: 33611744
Cardiovasc Toxicol · 2021
0.60