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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PIDD1
p53-induced death domain protein 1
Chromosome 11 Β· 11p15.5
NCBI Gene: 55367Ensembl: ENSG00000177595.19HGNC: HGNC:16491UniProt: Q9HB75
51PubMed Papers
21Diseases
0Drugs
15Pathogenic Variants
FUNCTIONAL ROLE
Apoptosis
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
regulation of canonical NF-kappaB signal transductionapoptotic processDNA damage responsecytoplasmintellectual developmental disorder, autosomal recessive 75, with neuropsychiatric features and variant lissencephalyIntellectual disabilityLissencephalylissencephaly spectrum disorders
✦AI Summary

PIDD1 (p53-induced death domain protein 1) is a multifunctional death domain protein that serves as a critical hub in DNA damage response and cellular stress pathways. Functionally, PIDD1 operates primarily through assembly of the PIDDosome, a multiprotein complex containing RAIDD and caspase-2, which promotes apoptosis in response to unresolved DNA interstrand crosslinks 1. This assembly is precisely controlled by stepwise phosphorylation and SUMOylation events at conserved residues 1. Beyond apoptosis, PIDD1 engages multiple signaling pathways: it associates with IKBKG and RIPK1 to enhance NF-ΞΊB activation 2, and regulates caspase-2-mediated cell death in response to centrosome aberrations 3. PIDD1 displays intein-like features enabling production of distinct polypeptides from a single precursor, facilitating diverse biological functions including cell cycle control and sterile inflammation 4. Clinically, biallelic PIDD1 mutations cause autosomal recessive intellectual developmental disorder with neuropsychiatric features and lissencephaly, characterized by cortical thickening and mTOR pathway dysregulation 5. Genome-wide association studies identify PIDD1 as a putatively causal gene for ADHD in fetal cortical tissues 6. PIDD1 is downregulated in lung adenocarcinoma through p53 ubiquitination by the E3 ligase DCAF13, suggesting its loss promotes cancer progression 7.

Sources cited
1
SUMOylation of PIDD1 at K879 and ATR-mediated phosphorylation at T788 control PIDDosome assembly in response to DNA interstrand crosslinks
PMID: 39448602
2
Biallelic PIDD1 mutations cause lissencephaly with thickened cortex and mTOR pathway dysregulation
PMID: 39743596
3
PIDD1 mediates caspase-2-driven apoptosis in response to extra centrosomes through centrosomal priming
PMID: 39475598
4
PIDD1 forms the NEMO-PIDDosome complex with RIPK1 and IKBKG to activate NF-ΞΊB signaling and sterile inflammation in response to supernumerary centrosomes
PMID: 37530438
5
PIDD1 exhibits intein-like features enabling multiple biological functions including cell cycle control and cell death
PMID: 35343572
6
PIDD1 is identified as a putatively causal gene for ADHD in fetal cortical tissues through Mendelian randomization
PMID: 40000109
7
PIDD1 is a p53 downstream target downregulated in lung adenocarcinoma through DCAF13-mediated p53 ubiquitination
PMID: 38163876
8
PIDD1 pathogenic variants are associated with neurodegeneration and intellectual, behavioral, and psychological abnormalities
PMID: 37716905
Disease Associationsβ“˜21
intellectual developmental disorder, autosomal recessive 75, with neuropsychiatric features and variant lissencephalyOpen Targets
0.76Strong
Intellectual disabilityOpen Targets
0.60Moderate
LissencephalyOpen Targets
0.51Moderate
lissencephaly spectrum disordersOpen Targets
0.50Moderate
PachygyriaOpen Targets
0.50Moderate
SeizureOpen Targets
0.50Moderate
Global developmental delayOpen Targets
0.46Moderate
autismOpen Targets
0.46Moderate
Abnormal corpus callosum morphologyOpen Targets
0.46Moderate
Atypical behaviorOpen Targets
0.46Moderate
psychosisOpen Targets
0.46Moderate
genetic disorderOpen Targets
0.45Moderate
Abnormality of the skeletal systemOpen Targets
0.43Moderate
breast cancerOpen Targets
0.40Weak
breast carcinomaOpen Targets
0.37Weak
Neurodevelopmental disorderOpen Targets
0.37Weak
corneal dystrophyOpen Targets
0.35Weak
Fuchs' endothelial dystrophyOpen Targets
0.34Weak
aortic stenosisOpen Targets
0.26Weak
aortic valve calcificationOpen Targets
0.22Weak
Intellectual developmental disorder, autosomal recessive 75, with neuropsychiatric features and variant lissencephalyUniProt
Pathogenic Variants15
NM_145886.4(PIDD1):c.1909C>T (p.Arg637Ter)Pathogenic
Intellectual developmental disorder, autosomal recessive 75, with neuropsychiatric features and variant lissencephaly|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 637
NM_145886.4(PIDD1):c.2214_2241del (p.Ala739fs)Likely pathogenic
Intellectual developmental disorder, autosomal recessive 75, with neuropsychiatric features and variant lissencephaly
β˜…β˜†β˜†β˜†2025β†’ Residue 739
NM_145886.4(PIDD1):c.989dup (p.Gln331fs)Pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2025β†’ Residue 331
NM_145886.4(PIDD1):c.1720del (p.Glu574fs)Likely pathogenic
Intellectual disability
β˜…β˜†β˜†β˜†2024β†’ Residue 574
NM_145886.4(PIDD1):c.1917+1G>TPathogenic
Intellectual developmental disorder, autosomal recessive 75, with neuropsychiatric features and variant lissencephaly
β˜…β˜†β˜†β˜†2024
NM_145886.4(PIDD1):c.1302+1G>ALikely pathogenic
Intellectual developmental disorder, autosomal recessive 75, with neuropsychiatric features and variant lissencephaly
β˜…β˜†β˜†β˜†2024
NM_145886.4(PIDD1):c.1819del (p.Ala607fs)Pathogenic
Intellectual developmental disorder, autosomal recessive 75, with neuropsychiatric features and variant lissencephaly
β˜…β˜†β˜†β˜†2024β†’ Residue 607
NM_145886.4(PIDD1):c.296-1G>ALikely pathogenic
Intellectual developmental disorder, autosomal recessive 75, with neuropsychiatric features and variant lissencephaly
β˜…β˜†β˜†β˜†2023
NM_145886.4(PIDD1):c.2584C>T (p.Arg862Trp)Pathogenic
Intellectual developmental disorder, autosomal recessive 75, with neuropsychiatric features and variant lissencephaly|not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 862
NM_145886.4(PIDD1):c.1635_1636del (p.Leu547fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 547
NM_145886.4(PIDD1):c.1804_1805del (p.Gly602fs)Pathogenic
Intellectual developmental disorder, autosomal recessive 75, with neuropsychiatric features and variant lissencephaly
β˜†β˜†β˜†β˜†2022β†’ Residue 602
NM_145886.4(PIDD1):c.2116_2120del (p.Val706fs)Pathogenic
Intellectual developmental disorder, autosomal recessive 75, with neuropsychiatric features and variant lissencephaly
β˜†β˜†β˜†β˜†2022β†’ Residue 706
NM_145886.4(PIDD1):c.2443C>T (p.Arg815Trp)Pathogenic
Intellectual developmental disorder, autosomal recessive 75, with neuropsychiatric features and variant lissencephaly
β˜†β˜†β˜†β˜†2022β†’ Residue 815
NM_145886.4(PIDD1):c.2275-1G>APathogenic
Intellectual developmental disorder, autosomal recessive 75, with neuropsychiatric features and variant lissencephaly|Cervical cancer
β˜†β˜†β˜†β˜†2022
NM_145886.4(PIDD1):c.2587C>T (p.Gln863Ter)Pathogenic
Intellectual disability|Intellectual developmental disorder, autosomal recessive 75, with neuropsychiatric features and variant lissencephaly
β˜†β˜†β˜†β˜†2022β†’ Residue 863
View on ClinVar β†—
Related Genes
IKBKGProtein interaction100%ATMProtein interaction100%PRKDCProtein interaction100%BIDProtein interaction96%FADDProtein interaction93%TNFRSF10BProtein interaction93%
Tissue Expression6 tissues
Liver
100%
Bone Marrow
95%
Ovary
93%
Lung
69%
Heart
25%
Brain
10%
Gene Interaction Network
Click a node to explore
PIDD1IKBKGATMPRKDCBIDFADDTNFRSF10B
PROTEIN STRUCTURE
Preparing viewer…
PDB2OF5 Β· 3.20 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.24LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF1.02 [0.84–1.24]
RankingsWhere PIDD1 stands among ~20K protein-coding genes
  • #8,712of 20,598
    Most Researched51
  • #2,463of 5,498
    Most Pathogenic Variants15
  • #13,042of 17,882
    Most Constrained (LOEUF)1.24
Genes detectedPIDD1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Dysregulation of mTOR signalling is a converging mechanism in lissencephaly.
PMID: 39743596
Nature Β· 2025
1.00
2
Caspase-2 kills cells with extra centrosomes.
PMID: 39475598
Sci Adv Β· 2024
0.90
3
DCAF13 inhibits the p53 signaling pathway by promoting p53 ubiquitination modification in lung adenocarcinoma.
PMID: 38163876
J Exp Clin Cancer Res Β· 2024
0.80
4
Stepwise phosphorylation and SUMOylation of PIDD1 drive PIDDosome assembly in response to DNA repair failure.
PMID: 39448602
Nat Commun Β· 2024
0.70
5
PIDD1 in cell cycle control, sterile inflammation and cell death.
PMID: 35343572
Biochem Soc Trans Β· 2022
0.60