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GeneE
25 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PLOD1
procollagen-lysine,2-oxoglutarate 5-dioxygenase 1
Chromosome 1 Β· 1p36.22
NCBI Gene: 5351Ensembl: ENSG00000083444.18HGNC: HGNC:9081UniProt: Q02809
173PubMed Papers
21Diseases
0Drugs
115Pathogenic Variants
RESEARCH IMPACT
TrendingVariant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
procollagen glucosyltransferase activityprotein O-linked glycosylationprotein bindingprocollagen-lysine 5-dioxygenase activityEhlers-Danlos syndrome, kyphoscoliotic type 1Ehlers-Danlos syndrome, kyphoscoliotic typeEhlers-Danlos syndrome, musculocontractural typefamilial thoracic aortic aneurysm and aortic dissection
✦AI Summary

PLOD1 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 1) is a lysyl hydroxylase that catalyzes hydroxylation of lysine residues in collagen alpha chains, forming hydroxylysine residues essential for collagen cross-linking stability and carbohydrate attachment 1. Beyond its classical role in collagen modification, PLOD1 exhibits unexpected glucosyltransferase activity affecting collagen fibril assembly 1. Clinically, PLOD1 is significantly upregulated across multiple cancer types including bladder cancer, hepatocellular carcinoma, thyroid carcinoma, glioma, and osteosarcoma, where elevated expression correlates with poor prognosis 23456. In the tumor microenvironment, PLOD1 expression positively correlates with immunosuppressive cell infiltration (monocytes, macrophages, tumor-associated fibroblasts) and negatively with immune-killing cells (CD8+ T cells, B cells) 2. Mechanistically, PLOD1 promotes cancer malignancy through multiple pathways: NF-ΞΊB/IL-6/STAT3-dependent metabolic reprogramming in hepatocellular carcinoma 3, Wnt/Ξ²-catenin pathway activation in thyroid carcinoma 4, HSF1 signaling in glioma 5, and Ξ²-catenin signaling in osteosarcoma 6. PLOD1 knockdown consistently reduces cancer cell proliferation, migration, and invasion across cancer types 2. In heritable vascular disease, a PLOD1 missense variant (p.Ser178Arg) segregates with familial thoracic aortic aneurysm/dissection, affecting glycosyltransferase domain folding and impairing collagen fibril girth 1.

Sources cited
1
PLOD1 is aberrantly expressed across multiple cancer types with poor prognosis; correlates with immunosuppressive tumor microenvironment and immune checkpoint expression
PMID: 39767559
2
PLOD1 promotes hepatocellular carcinoma proliferation and stemness via NF-ΞΊB/IL-6/STAT3 signaling and TCA cycle metabolic reprogramming
PMID: 40290518
3
PLOD1 promotes thyroid carcinoma proliferation and migration through glycolysis via Wnt/Ξ²-catenin pathway, regulated by transcription factor MAZ
PMID: 39424162
4
PLOD1 acts as tumor promoter in glioma via activation of HSF1 signaling pathway, enhancing proliferation and colony formation
PMID: 34845571
5
PLOD1 is upregulated in osteosarcoma, associated with metastasis and poor prognosis; promotes proliferation, migration and invasion via Ξ²-catenin signaling
PMID: 33134376
6
PLOD1 possesses glucosyltransferase activity affecting collagen fibril assembly; pathogenic variant (p.Ser178Arg) causes thoracic aortic aneurysm/dissection via impaired domain folding
PMID: 34400365
7
PLOD1 expression correlates with poor bladder cancer prognosis and can serve as prognostic biomarker
PMID: 35149972
Disease Associationsβ“˜21
Ehlers-Danlos syndrome, kyphoscoliotic type 1Open Targets
0.82Strong
Ehlers-Danlos syndrome, kyphoscoliotic typeOpen Targets
0.78Strong
Ehlers-Danlos syndrome, musculocontractural typeOpen Targets
0.57Moderate
familial thoracic aortic aneurysm and aortic dissectionOpen Targets
0.54Moderate
Ehlers-Danlos syndromeOpen Targets
0.52Moderate
kyphoscoliotic Ehlers-Danlos syndromeOpen Targets
0.47Moderate
Joint hypermobilityOpen Targets
0.43Moderate
Rare disease with thoracic aortic aneurysm and aortic dissectionOpen Targets
0.42Moderate
neurodegenerative diseaseOpen Targets
0.41Moderate
cryptorchidismOpen Targets
0.35Weak
HydrocephalusOpen Targets
0.34Weak
omphaloceleOpen Targets
0.34Weak
Feeding difficultiesOpen Targets
0.34Weak
Generalized neonatal hypotoniaOpen Targets
0.34Weak
High palateOpen Targets
0.34Weak
Macrocephaly at birthOpen Targets
0.34Weak
Narrow chestOpen Targets
0.34Weak
Porencephalic cystOpen Targets
0.34Weak
Thoracolumbar scoliosisOpen Targets
0.34Weak
Umbilical herniaOpen Targets
0.34Weak
Ehlers-Danlos syndrome, kyphoscoliotic type, 1UniProt
Pathogenic Variants115
NM_000302.4(PLOD1):c.1651-2A>GPathogenic
not provided|Ehlers-Danlos syndrome, kyphoscoliotic type 1|Familial thoracic aortic aneurysm and aortic dissection
β˜…β˜…β˜†β˜†2026
NM_000302.4(PLOD1):c.2008C>T (p.Arg670Ter)Pathogenic
Ehlers-Danlos syndrome, kyphoscoliotic type 1|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 670
NM_000302.4(PLOD1):c.467-2A>GLikely pathogenic
Ehlers-Danlos syndrome, kyphoscoliotic type 1|Familial thoracic aortic aneurysm and aortic dissection
β˜…β˜…β˜†β˜†2025
NM_000302.4(PLOD1):c.1533C>G (p.Tyr511Ter)Pathogenic
Ehlers-Danlos syndrome, kyphoscoliotic type 1|not provided|Ehlers-Danlos syndrome|Familial thoracic aortic aneurysm and aortic dissection|PLOD1-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 511
NM_000302.4(PLOD1):c.698_699insCCTCTGGCCTA (p.Asp234fs)Pathogenic
not provided|Ehlers-Danlos syndrome, kyphoscoliotic type 1
β˜…β˜…β˜†β˜†2025β†’ Residue 234
NM_000302.4(PLOD1):c.1261dup (p.Ala421fs)Pathogenic
Ehlers-Danlos syndrome, kyphoscoliotic type 1|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 421
NM_000302.4(PLOD1):c.367C>T (p.Gln123Ter)Pathogenic
Ehlers-Danlos syndrome, kyphoscoliotic type 1|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 123
NM_000302.4(PLOD1):c.404_423del (p.Asp135fs)Pathogenic
not provided|Ehlers-Danlos syndrome, kyphoscoliotic type 1|Familial thoracic aortic aneurysm and aortic dissection
β˜…β˜…β˜†β˜†2025β†’ Residue 135
NM_000302.4(PLOD1):c.1589G>A (p.Trp530Ter)Likely pathogenic
Ehlers-Danlos syndrome, kyphoscoliotic type 1|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 530
NM_000302.4(PLOD1):c.1999G>A (p.Ala667Thr)Likely pathogenic
not provided|Ehlers-Danlos syndrome, kyphoscoliotic type 1|Familial thoracic aortic aneurysm and aortic dissection
β˜…β˜…β˜†β˜†2025β†’ Residue 667
NM_000302.4(PLOD1):c.1870del (p.Thr624fs)Pathogenic
Ehlers-Danlos syndrome, kyphoscoliotic type 1
β˜…β˜…β˜†β˜†2025β†’ Residue 624
NM_000302.4(PLOD1):c.979C>T (p.Gln327Ter)Pathogenic
Ehlers-Danlos syndrome, kyphoscoliotic type 1|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 327
NM_000302.4(PLOD1):c.1906C>T (p.Gln636Ter)Pathogenic
Ehlers-Danlos syndrome, kyphoscoliotic type 1|Ehlers-Danlos syndrome|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 636
NM_000302.4(PLOD1):c.327del (p.Arg111fs)Pathogenic
not provided|Ehlers-Danlos syndrome, kyphoscoliotic type 1
β˜…β˜…β˜†β˜†2024β†’ Residue 111
NM_000302.4(PLOD1):c.402del (p.Asp135fs)Pathogenic
not provided|Ehlers-Danlos syndrome, kyphoscoliotic type 1
β˜…β˜…β˜†β˜†2024β†’ Residue 135
NM_000302.4(PLOD1):c.955C>T (p.Arg319Ter)Pathogenic
Ehlers-Danlos syndrome, kyphoscoliotic type 1|not provided|Ehlers-Danlos syndrome
β˜…β˜…β˜†β˜†2024β†’ Residue 319
NM_000302.4(PLOD1):c.2032G>A (p.Gly678Arg)Pathogenic
Ehlers-Danlos syndrome, kyphoscoliotic type 1
β˜…β˜…β˜†β˜†2024β†’ Residue 678
NM_000302.4(PLOD1):c.467-2delPathogenic
Ehlers-Danlos syndrome, kyphoscoliotic type 1|Familial thoracic aortic aneurysm and aortic dissection
β˜…β˜…β˜†β˜†2024
NM_000302.4(PLOD1):c.168+1G>TLikely pathogenic
Ehlers-Danlos syndrome, kyphoscoliotic type 1
β˜…β˜…β˜†β˜†2024
NM_000302.4(PLOD1):c.1795del (p.Ile599fs)Pathogenic
Ehlers-Danlos syndrome, kyphoscoliotic type 1
β˜…β˜…β˜†β˜†2024β†’ Residue 599
View on ClinVar β†—
Related Genes
COLGALT1Protein interaction97%COLGALT2Protein interaction93%PLOD2Protein interaction91%P4HA2Protein interaction91%CAMKMTProtein interaction90%P4HA1Protein interaction88%
Tissue Expression6 tissues
Liver
100%
Heart
80%
Lung
68%
Ovary
62%
Brain
32%
Bone Marrow
15%
Gene Interaction Network
Click a node to explore
PLOD1COLGALT1COLGALT2PLOD2P4HA2CAMKMTP4HA1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q02809
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.94LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.75 [0.61–0.94]
RankingsWhere PLOD1 stands among ~20K protein-coding genes
  • #2,554of 20,598
    Most Researched173 Β· top quartile
  • #679of 5,498
    Most Pathogenic Variants115 Β· top quartile
  • #8,716of 17,882
    Most Constrained (LOEUF)0.94
Genes detectedPLOD1
Sources retrieved25 papers
Response timeβ€”
πŸ“„ Sources
25β–Ό
1
TEAD4 functions as a prognostic biomarker and triggers EMT via PI3K/AKT pathway in bladder cancer.
PMID: 35581606
J Exp Clin Cancer Res Β· 2022
1.00
2
Pan-Cancer Analysis Reveals the Potential of PLOD1 as a Prognostic and Immune Biomarker for Human Cancer.
PMID: 39767559
Biomedicines Β· 2024
0.90
3
P3H4 and PLOD1 expression associates with poor prognosis in bladder cancer.
PMID: 35149972
Clin Transl Oncol Β· 2022
0.80
4
Synergistic Anti-Aging Effects of Adipose-Derived Stem Cell Extracellular Vesicles Loaded With Natural Compounds.
PMID: 39924347
J Cosmet Dermatol Β· 2025
0.72
5
PLOD1 promotes the malignancy of hepatocellular carcinoma by facilitating the NF-ΞΊB/IL-6/STAT3-dependent TCA cycle.
PMID: 40290518
JHEP Rep Β· 2025
0.70