HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PLPP3
phospholipid phosphatase 3
Chromosome 1 · 1p32.2
NCBI Gene: 8613Ensembl: ENSG00000162407.10HGNC: HGNC:9229UniProt: O14495
61PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
integrin-mediated signaling pathwayintegrin bindingprotein bindingphosphatidate phosphatase activitycoronary artery diseasehypertensionMyocardial Ischemiacoronary atherosclerosis
✦AI Summary

PLPP3 encodes lipid phosphate phosphatase 3 (LPP3), a membrane-bound enzyme that dephosphorylates bioactive lipids including lysophosphatidic acid (LPA) and sphingosine-1-phosphate 1. Primary function: PLPP3 terminates LPA signaling by converting it to receptor-inactive products, thereby regulating vascular cell behavior and inflammation 2. Mechanism: LPP3 localizes to endothelial cells, smooth muscle cells, and macrophages within atherosclerotic plaques, where it counteracts pro-inflammatory LPA signaling through LPA receptors 3. In vascular endothelium, PLPP3 is upregulated during oxidative stress and regulated by NF-κB transcription factors downstream of LPA signaling 4. Disease relevance: Genome-wide association studies identified PLPP3 variants associated with coronary artery disease susceptibility 5. Hepatic and systemic PLPP3 deletion worsens atherosclerosis in mice through altered plasma lipid composition, with smooth muscle cell LPP3 being particularly critical 65. Clinical significance: PLPP3 repression in atherosclerotic plaques correlates with increased cardiovascular event risk, suggesting PLPP3 dysfunction promotes atherogenesis 3. The LPA-LPP3 axis represents a novel therapeutic target orthogonal to traditional lipid-lowering approaches 2. Additionally, PLPP3 expression in endothelial cells promotes vascular repair after ischemic stroke 7.

Sources cited
1
PLPP3 encodes LPP3, a membrane enzyme that dephosphorylates LPA and sphingosine-1-phosphate; plays crucial role in vascular development
PMID: 29518748
2
LPP3 terminates LPA signaling; PLPP3 variants predict lower LPP3 levels and associate with premature coronary artery disease risk
PMID: 32376340
3
PLPP3 transcript and protein are repressed in atherosclerotic plaques versus normal arteries; localized to macrophages, smooth muscle, and endothelial cells
PMID: 30003117
4
PLPP3 expression is regulated by NF-κB transcription factors; LPA promotes NF-κB binding to PLPP3 promoter
PMID: 31362988
5
Reduced Plpp3 expression in mice substantially increases atherosclerosis; smooth muscle cell LPP3 is critical regulator of atherosclerosis
PMID: 31533471
6
Hepatic Plpp3 deletion alters plasma lipid composition and worsens atherosclerosis in apoE-/- mice
PMID: 28291223
7
PLPP3 expression in endothelial cells promotes vascular repair after ischemic stroke through m6A methylation regulation
PMID: 36717587
Disease Associationsⓘ20
coronary artery diseaseOpen Targets
0.51Moderate
hypertensionOpen Targets
0.50Moderate
Myocardial IschemiaOpen Targets
0.48Moderate
coronary atherosclerosisOpen Targets
0.48Moderate
myocardial infarctionOpen Targets
0.48Moderate
angina pectorisOpen Targets
0.47Moderate
essential hypertensionOpen Targets
0.47Moderate
cardiovascular diseaseOpen Targets
0.46Moderate
Abnormality of the skeletal systemOpen Targets
0.45Moderate
heart failureOpen Targets
0.44Moderate
heart diseaseOpen Targets
0.42Moderate
atrial fibrillationOpen Targets
0.41Moderate
Increased blood pressureOpen Targets
0.39Weak
response to xenobiotic stimulusOpen Targets
0.38Weak
retinopathyOpen Targets
0.38Weak
Epiretinal membraneOpen Targets
0.38Weak
atrial flutterOpen Targets
0.38Weak
alcohol drinkingOpen Targets
0.37Weak
response to statinOpen Targets
0.37Weak
kidney failureOpen Targets
0.35Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
DGAT1Protein interaction100%SMPD4Protein interaction100%SPHK2Protein interaction99%SGPL1Protein interaction99%SPHK1Protein interaction98%CDS1Protein interaction97%
Tissue Expression6 tissues
Heart
100%
Ovary
93%
Liver
92%
Brain
64%
Lung
64%
Bone Marrow
29%
Gene Interaction Network
Click a node to explore
PLPP3DGAT1SMPD4SPHK2SGPL1SPHK1CDS1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt O14495
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.40Moderately Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.20 [0.11–0.40]
RankingsWhere PLPP3 stands among ~20K protein-coding genes
  • #7,595of 20,598
    Most Researched61
  • #2,035of 17,882
    Most Constrained (LOEUF)0.40 · top quartile
Genes detectedPLPP3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
FTO-dependent m
PMID: 36717587
Nat Commun · 2023
1.00
2
Liver-specific deletion of the Plpp3 gene alters plasma lipid composition and worsens atherosclerosis in apoE
PMID: 28291223
Sci Rep · 2017
0.90
3
Coronary Artery Disease Risk-Associated
PMID: 31533471
Arterioscler Thromb Vasc Biol · 2019
0.80
4
Lipid phosphate phosphatase 3 in vascular pathophysiology.
PMID: 29518748
Atherosclerosis · 2018
0.70
5
Roles for lysophosphatidic acid signaling in vascular development and disease.
PMID: 32376340
Biochim Biophys Acta Mol Cell Biol Lipids · 2020
0.60