HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PLSCR1
phospholipid scramblase 1
Chromosome 3 · 3q24
NCBI Gene: 5359Ensembl: ENSG00000188313.13HGNC: HGNC:9092UniProt: C9J7K9
130PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
ApoptosisReceptorTransporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleusDNA-binding transcription activator activity, RNA polymerase II-specificvirus receptor activitynuclease activityCOVID-19self-injurious ideationacute myeloid leukemiabreast cancer
✦AI Summary

PLSCR1 (phospholipid scramblase 1) is an interferon-stimulated gene that functions as a broad-spectrum cell-autonomous antiviral restriction factor. Primary function: PLSCR1 restricts viral entry across multiple pathogens, including SARS-CoV-2, HIV-1/2, SIV, and human cytomegalovirus (HCMV) 123. Mechanism: PLSCR1 employs pathogen-specific mechanisms depending on the virus. Against SARS-CoV-2, it blocks spike-mediated fusion via a C-terminal β-barrel domain independent of lipid scramblase activity 1, and separately downregulates plasma membrane expression of ACE2 without reducing total cellular ACE2 levels 2. For HIV-1, PLSCR1 restricts virion-cell and cell-cell fusion without affecting CD4 or CXCR4 expression 3. Against HCMV, it represses viral immediate early gene transcription by disrupting CREB-IE2 and CBP-IE2 complexes 4. Disease relevance: Genetic variants in PLSCR1 are associated with critical COVID-19 severity 5, and PLSCR1 mutations have been identified in COVID-19 susceptible individuals 1. PLSCR1 is upregulated in systemic lupus erythematosus and correlates with interferon signature activity 6. Clinical significance: PLSCR1 activity extends to multiple SARS-CoV-2 variants including Delta and Omicron 1, though recent variants show evidence of evolutionary adaptation to circumvent PLSCR1 restriction 7.

Sources cited
1
PLSCR1 is a potent cell-autonomous restriction factor against SARS-CoV-2 and other coronaviruses; blocks spike-mediated fusion via C-terminal β-barrel domain independent of lipid scramblase activity
PMID: 37438530
2
PLSCR1 inhibits SARS-CoV-2 entry by downregulating plasma membrane ACE2 expression without affecting total cellular ACE2 levels
PMID: 39945535
3
PLSCR1 restricts HIV-1, HIV-2, and SIV by blocking virion-cell and cell-cell fusion without affecting CD4 or CXCR4 expression
PMID: 41031002
4
PLSCR1 negatively regulates HCMV replication by repressing transcription from viral immediate early promoters through disruption of CREB-IE2 and CBP-IE2 complexes
PMID: 35138119
5
PLSCR1 variants are identified as significantly predisposing to critical COVID-19 in whole-genome sequencing study
PMID: 35255492
6
PLSCR1 is a transcription factor associated with interferon-stimulated gene expression in systemic lupus erythematosus patients
PMID: 34284174
7
PLSCR1 restricts spike-mediated SARS-CoV-2 entry via endocytic route; recent SARS-CoV-2 variants have evolved mechanisms to circumvent PLSCR1 restriction
PMID: 39316623
Disease Associationsⓘ20
COVID-19Open Targets
0.44Moderate
self-injurious ideationOpen Targets
0.16Weak
acute myeloid leukemiaOpen Targets
0.10Suggestive
breast cancerOpen Targets
0.08Suggestive
Mantle cell lymphomaOpen Targets
0.08Suggestive
neoplasmOpen Targets
0.07Suggestive
strokeOpen Targets
0.07Suggestive
influenzaOpen Targets
0.07Suggestive
colorectal carcinomaOpen Targets
0.07Suggestive
Ischemic strokeOpen Targets
0.06Suggestive
Romano-Ward syndromeOpen Targets
0.06Suggestive
infectionOpen Targets
0.06Suggestive
liver cancerOpen Targets
0.06Suggestive
Blackfan-Diamond anemiaOpen Targets
0.06Suggestive
Familial short QT syndromeOpen Targets
0.05Suggestive
systemic lupus erythematosusOpen Targets
0.05Suggestive
Arrhythmogenic right ventricular dysplasiaOpen Targets
0.05Suggestive
Brugada syndromeOpen Targets
0.05Suggestive
familial atrial fibrillationOpen Targets
0.05Suggestive
X-linked retinal dysplasiaOpen Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
IFIT3Protein interaction79%RSAD2Protein interaction74%IFI44LProtein interaction73%OAS1Protein interaction73%BACE1Protein interaction73%STAT1Protein interaction72%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
95%
Ovary
65%
Liver
58%
Heart
36%
Brain
26%
Gene Interaction Network
Click a node to explore
PLSCR1IFIT3RSAD2IFI44LOAS1BACE1STAT1
PROTEIN STRUCTURE
Preparing viewer…
PDB1Y2A · 2.20 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.67LoF Tolerant
pLIⓘ
0.72Intermediate
Observed/Expected LoF0.32 [0.17–0.67]
RankingsWhere PLSCR1 stands among ~20K protein-coding genes
  • #3,604of 20,598
    Most Researched130 · top quartile
  • #4,970of 17,882
    Most Constrained (LOEUF)0.67
Genes detectedPLSCR1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
PLSCR1 is a cell-autonomous defence factor against SARS-CoV-2 infection.
PMID: 37438530
Nature · 2023
1.00
2
Expression characteristics of interferon-stimulated genes and possible regulatory mechanisms in lupus patients using transcriptomics analyses.
PMID: 34284174
EBioMedicine · 2021
0.90
3
Whole-genome sequencing reveals host factors underlying critical COVID-19.
PMID: 35255492
Nature · 2022
0.80
4
PLSCR1 suppresses SARS-CoV-2 infection by downregulating cell surface ACE2.
PMID: 39945535
J Virol · 2025
0.70
5
The Interferon-Inducible Human PLSCR1 Protein Is a Restriction Factor of Human Cytomegalovirus.
PMID: 35138119
Microbiol Spectr · 2022
0.60