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GeneE
50 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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STAT1
signal transducer and activator of transcription 1
Chromosome 2 · 2q32.2
NCBI Gene: 6772Ensembl: ENSG00000115415.21HGNC: HGNC:11362UniProt: A0A669KB68
1,153PubMed Papers
23Diseases
0Drugs
98Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedHub GeneTranscription Factor
RESEARCH IMPACT
Highly StudiedTrendingVariant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
type I interferon-mediated signaling pathwaynucleusRNA polymerase II transcription regulatory region sequence-specific DNA bindingRNA polymerase II cis-regulatory region sequence-specific DNA bindingChronic mucocutaneous candidosisimmunodeficiency 31Bautoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndromeSusceptibility to viral and mycobacterial infections
✦AI Summary

STAT1 is a signal transducer and transcription factor that mediates cellular responses to interferons and cytokines, playing a central role in immune defense and inflammatory regulation. Upon type I interferon (IFN-α/β) binding, STAT1 is phosphorylated by JAK kinases, then dimerizes with STAT2 and IRF-9 to form ISGF3, which translocates to the nucleus and binds IFN-stimulated response elements (ISRE) to activate antiviral gene programs 1. In response to type II interferon (IFN-γ), STAT1 undergoes tyrosine and serine phosphorylation, forming a homodimer (GAF) that binds IFN-gamma activated sequences (GAS) to drive antiviral and inflammatory gene expression 2. Beyond canonical interferon signaling, STAT1 mediates responses to growth factors including KITLG/SCF and FGF receptor signaling, and can be phosphorylated at Thr-749 by IKBKB following LPS stimulation to activate IL6 and IL12B transcription 3. STAT1 dysfunction is associated with immunodeficiency syndromes and gain-of-function variants cause chr2 mucocutaneous candidiasis with predisposition to infections and autoimmunity 45. Recent findings reveal non-canonical functions: STAT1 suppresses HIF1A-driven angiogenesis under ischemic conditions 6, and EGFR-activated STAT1 in fibroblasts drives skin fibrosis independent of interferon signaling 7. Dysregulated STAT1 activity participates in ferroptosis in diabetic nephropathy and vascular calcification via NLRP3 pathway activation 89.

Sources cited
1
STAT1 phosphorylation and ISGF3 complex formation with STAT2 and IRF-9 mediates type I interferon signaling
PMID: 35568036
2
STAT1 undergoes tyrosine and serine phosphorylation in response to IFN-γ
PMID: 26479788
3
STAT1 phosphorylation at Thr-749 by IKBKB promotes transcriptional activation of IL6 and IL12B
PMID: 32209697
4
STAT1 gain-of-function variants cause chronic mucocutaneous candidiasis and expanded clinical complications
PMID: 38084635
5
STAT1 GOF drives autoimmunity primarily through dysregulated IFN-γ signaling rather than type I IFN
PMID: 37406138
6
STAT1 suppresses HIF1A expression and impairs post-ischemic angiogenesis
PMID: 36300763
7
EGFR directly activates STAT1 in fibroblasts to promote skin fibrosis independently of JAK/interferon signaling
PMID: 41068129
8
STAT1 participates in ferroptosis in diabetic nephropathy via ACSL1 transcriptional regulation
PMID: 39134684
9
Phosphorylated STAT1 mediates STING-induced vascular calcification through NLRP3 activation
PMID: 40193045
Disease Associationsⓘ23
Chronic mucocutaneous candidosisOpen Targets
0.81Strong
immunodeficiency 31BOpen Targets
0.78Strong
autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndromeOpen Targets
0.75Strong
Susceptibility to viral and mycobacterial infectionsOpen Targets
0.63Moderate
cancerOpen Targets
0.55Moderate
immunodeficiency diseaseOpen Targets
0.48Moderate
combined immunodeficiencyOpen Targets
0.47Moderate
Autoimmune enteropathy and endocrinopathy-susceptibility to chronic infections syndromeOpen Targets
0.46Moderate
chronic mucocutaneous candidiasisOpen Targets
0.43Moderate
genetic developmental and epileptic encephalopathyOpen Targets
0.42Moderate
COVID-19Open Targets
0.38Weak
genetic disorderOpen Targets
0.34Weak
anaphylaxisOpen Targets
0.30Weak
esophageal atresia/tracheoesophageal fistulaOpen Targets
0.26Weak
Tracheoesophageal fistulaOpen Targets
0.26Weak
bilirubin metabolism diseaseOpen Targets
0.25Weak
hypothyroidismOpen Targets
0.18Weak
infantile cataract, skin abnormalities, glutamate excess, and impaired intellectual developmentOpen Targets
0.15Weak
systemic lupus erythematosusOpen Targets
0.13Weak
rheumatoid arthritisOpen Targets
0.13Weak
Immunodeficiency 31AUniProt
Immunodeficiency 31BUniProt
Immunodeficiency 31CUniProt
Pathogenic Variants98
NM_007315.4(STAT1):c.800C>T (p.Ala267Val)Pathogenic
Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome|Mendelian susceptibility to mycobacterial diseases due to partial STAT1 deficiency;Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome;Immunodeficiency 31B|Chronic mucocutaneous candidiasis|Mendelian susceptibility to mycobacterial diseases due to partial STAT1 deficiency|not provided|Immunodeficiency 31B
★★☆☆2026→ Residue 267
NM_007315.4(STAT1):c.820C>T (p.Arg274Trp)Pathogenic
Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome|Mendelian susceptibility to mycobacterial diseases due to partial STAT1 deficiency;Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome;Immunodeficiency 31B|not provided|STAT1-related disorder
★★☆☆2025→ Residue 274
NM_007315.4(STAT1):c.821G>A (p.Arg274Gln)Pathogenic
Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome|Mendelian susceptibility to mycobacterial diseases due to partial STAT1 deficiency;Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome;Immunodeficiency 31B|not provided|STAT1-related disorder|See cases
★★☆☆2025→ Residue 274
NM_007315.4(STAT1):c.1011_1012del (p.Val339fs)Pathogenic
Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome;Mendelian susceptibility to mycobacterial diseases due to partial STAT1 deficiency;Immunodeficiency 31B|not provided
★★☆☆2025→ Residue 339
NM_007315.4(STAT1):c.1154C>T (p.Thr385Met)Pathogenic
Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome|Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome;Immunodeficiency 31B;Mendelian susceptibility to mycobacterial diseases due to partial STAT1 deficiency|Inherited Immunodeficiency Diseases|not provided|STAT1-related disorder
★★☆☆2025→ Residue 385
NM_007315.4(STAT1):c.863C>T (p.Thr288Ile)Pathogenic
Immunodeficiency 31B;Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome;Mendelian susceptibility to mycobacterial diseases due to partial STAT1 deficiency|not provided
★★☆☆2024→ Residue 288
NM_007315.4(STAT1):c.820C>G (p.Arg274Gly)Pathogenic
Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome|Mendelian susceptibility to mycobacterial diseases due to partial STAT1 deficiency;Immunodeficiency 31B;Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome
★★☆☆2022→ Residue 274
NM_007315.4(STAT1):c.970T>C (p.Cys324Arg)Likely pathogenic
Mendelian susceptibility to mycobacterial diseases due to partial STAT1 deficiency;Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome;Immunodeficiency 31B|Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome
★★☆☆2021→ Residue 324
NM_007315.4(STAT1):c.876C>A (p.Asp292Glu)Likely pathogenic
Immunodeficiency 31B;Mendelian susceptibility to mycobacterial diseases due to partial STAT1 deficiency;Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome|not provided|Immunodeficiency 31B
★★☆☆2019→ Residue 292
NM_007315.4(STAT1):c.88del (p.Ile30fs)Pathogenic
Immunodeficiency 31B|not provided
★★☆☆2015→ Residue 30
NM_007315.4(STAT1):c.1151G>A (p.Gly384Asp)Likely pathogenic
Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome
★☆☆☆2026→ Residue 384
NM_007315.4(STAT1):c.1204_1205delinsTT (p.Ala402Phe)Pathogenic
not provided
★☆☆☆2025→ Residue 402
NM_007315.4(STAT1):c.1127+1G>APathogenic
Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome;Mendelian susceptibility to mycobacterial diseases due to partial STAT1 deficiency;Immunodeficiency 31B
★☆☆☆2025
NM_007315.4(STAT1):c.372+2T>CLikely pathogenic
Immunodeficiency 31B
★☆☆☆2025
NM_007315.4(STAT1):c.895_896insT (p.Gln299fs)Pathogenic
Mendelian susceptibility to mycobacterial diseases due to partial STAT1 deficiency;Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome;Immunodeficiency 31B
★☆☆☆2025→ Residue 299
NM_007315.4(STAT1):c.1198C>G (p.Leu400Val)Likely pathogenic
Mendelian susceptibility to mycobacterial diseases due to partial STAT1 deficiency;Immunodeficiency 31B;Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome
★☆☆☆2025→ Residue 400
NM_007315.4(STAT1):c.1833del (p.Ile612fs)Pathogenic
Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome;Mendelian susceptibility to mycobacterial diseases due to partial STAT1 deficiency;Immunodeficiency 31B
★☆☆☆2025→ Residue 612
NM_007315.4(STAT1):c.493G>C (p.Asp165His)Likely pathogenic
Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome|Mendelian susceptibility to mycobacterial diseases due to partial STAT1 deficiency
★☆☆☆2025→ Residue 165
NM_007315.4(STAT1):c.974T>A (p.Met325Lys)Likely pathogenic
Mendelian susceptibility to mycobacterial diseases due to partial STAT1 deficiency;Immunodeficiency 31B;Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome
★☆☆☆2025→ Residue 325
NM_007315.4(STAT1):c.1239_1240insT (p.Asn414Ter)Pathogenic
Mendelian susceptibility to mycobacterial diseases due to partial STAT1 deficiency;Autoimmune enteropathy and endocrinopathy - susceptibility to chronic infections syndrome;Immunodeficiency 31B
★☆☆☆2025→ Residue 414
View on ClinVar ↗
Related Genes
CAMK2AProtein interaction100%CAMK2BProtein interaction100%FHL1Protein interaction100%IRF5Protein interaction100%PTAFRProtein interaction100%PTPN2Protein interaction100%
Tissue Expression6 tissues
Lung
100%
Brain
91%
Heart
82%
Liver
67%
Bone Marrow
55%
Ovary
40%
Gene Interaction Network
Click a node to explore
STAT1CAMK2ACAMK2BFHL1IRF5PTAFRPTPN2
PROTEIN STRUCTURE
Preparing viewer…
PDB3WWT · 2.00 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.27Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.19 [0.13–0.27]
RankingsWhere STAT1 stands among ~20K protein-coding genes
  • #128of 20,598
    Most Researched1,153 · top 1%
  • #789of 5,498
    Most Pathogenic Variants98 · top quartile
  • #912of 17,882
    Most Constrained (LOEUF)0.27 · top 10%
Genes detectedSTAT1
Sources retrieved50 papers
Response time—
📄 Sources
50▼
1
Redox Regulation of STAT1 and STAT3 Signaling.
PMID: 32987855
Int J Mol Sci · 2020
1.00
2
The PRMT6/STAT1/ACSL1 axis promotes ferroptosis in diabetic nephropathy.
PMID: 39134684
Cell Death Differ · 2024
0.90
3
Dual inhibition of STAT1 and STAT3 activation downregulates expression of PD-L1 in human breast cancer cells.
PMID: 29702007
Expert Opin Ther Targets · 2018
0.86
4
Ablation of endothelial
PMID: 36300763
Autophagy · 2023
0.80
5
REST negatively and ISGF3 positively regulate the human STAT1 gene in melanoma.
PMID: 23598529
Mol Cancer Ther · 2013
0.80