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GeneE
25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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PTPN2
protein tyrosine phosphatase non-receptor type 2
Chromosome 18 · 18p11.21
NCBI Gene: 5771Ensembl: ENSG00000175354.20HGNC: HGNC:9650UniProt: A8K3N4
249PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
RESEARCH IMPACT
Trending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
plasma membraneprotein tyrosine phosphatase activityintegrin bindingprotein bindingrheumatoid arthritistype 1 diabetes mellitusautoimmune diseaseCrohn's disease
✦AI Summary

PTPN2 is a non-receptor protein tyrosine phosphatase that serves as a critical negative regulator of multiple signaling pathways, particularly those involved in immune responses and cellular homeostasis 1. The protein functions by dephosphorylating key signaling molecules including JAK-STAT pathway components, receptor tyrosine kinases, and non-receptor kinases, thereby attenuating their activity 21. PTPN2 plays essential roles in maintaining intestinal barrier function through regulation of macrophage-intestinal epithelial cell interactions via IL-6 signaling control 2. In cancer immunotherapy contexts, PTPN2 acts as a brake on anti-tumor immune responses by dampening interferon signaling and T cell function 31. Loss of PTPN2 enhances interferon-γ-mediated effects on antigen presentation and growth suppression, making tumors more susceptible to immune checkpoint blockade therapy 3. The development of PTPN2/PTPN1 inhibitors like ABBV-CLS-484 has shown promise in overcoming immunotherapy resistance by enhancing JAK-STAT signaling and promoting CD8+ T cell and natural killer cell function 1. PTPN2 mutations are also implicated in T-cell acute lymphoblastic leukemia, particularly in specific disease subtypes 4. Overall, PTPN2 represents a key regulatory hub controlling immune responses and represents an important target for cancer immunotherapy development.

Sources cited
1
PTPN2 is a negative regulator of immune responses and PTPN2/PTPN1 inhibitors enhance anti-tumor immunity
PMID: 37794185
2
PTPN2 deletion in tumor cells increases immunotherapy efficacy by enhancing interferon-γ effects
PMID: 28723893
3
PTPN2 regulates macrophage-intestinal epithelial cell interactions and maintains intestinal barrier function via IL-6 control
PMID: 32652144
4
PTPN2 mutations are associated with specific subtypes of T-cell acute lymphoblastic leukemia
PMID: 28671688
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
rheumatoid arthritisOpen Targets
0.52Moderate
type 1 diabetes mellitusOpen Targets
0.51Moderate
autoimmune diseaseOpen Targets
0.48Moderate
Crohn's diseaseOpen Targets
0.48Moderate
psoriasisOpen Targets
0.48Moderate
inflammatory bowel diseaseOpen Targets
0.48Moderate
systemic lupus erythematosusOpen Targets
0.43Moderate
hypothyroidismOpen Targets
0.42Moderate
ulcerative colitisOpen Targets
0.41Moderate
celiac diseaseOpen Targets
0.41Moderate
arthritisOpen Targets
0.39Weak
common variable immunodeficiencyOpen Targets
0.38Weak
lupus erythematosusOpen Targets
0.37Weak
psoriasis vulgarisOpen Targets
0.36Weak
skin diseaseOpen Targets
0.36Weak
dermatitisOpen Targets
0.34Weak
colitisOpen Targets
0.33Weak
squamous cell carcinomaOpen Targets
0.31Weak
enteritisOpen Targets
0.31Weak
esophageal carcinomaOpen Targets
0.31Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
JAK2Protein interaction100%STAT1Protein interaction100%SRCProtein interaction100%EGFRProtein interaction100%STAT5BProtein interaction100%TYK2Protein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
48%
Liver
43%
Ovary
42%
Brain
20%
Heart
18%
Gene Interaction Network
Click a node to explore
PTPN2JAK2STAT1SRCEGFRSTAT5BTYK2
PROTEIN STRUCTURE
Preparing viewer…
PDB7F5O · 1.70 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.62LoF Tolerant
pLIⓘ
0.51Intermediate
Observed/Expected LoF0.39 [0.25–0.62]
RankingsWhere PTPN2 stands among ~20K protein-coding genes
  • #1,550of 20,598
    Most Researched249 · top 10%
  • #4,319of 17,882
    Most Constrained (LOEUF)0.62 · top quartile
Genes detectedPTPN2
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
The PTPN2/PTPN1 inhibitor ABBV-CLS-484 unleashes potent anti-tumour immunity.
PMID: 37794185
Nature · 2023
1.00
2
In vivo CRISPR screening identifies Ptpn2 as a cancer immunotherapy target.
PMID: 28723893
Nature · 2017
0.90
3
New insights into the interplay between autophagy, gut microbiota and inflammatory responses in IBD.
PMID: 31286804
Autophagy · 2020
0.80
4
PTPN2 Regulates Interactions Between Macrophages and Intestinal Epithelial Cells to Promote Intestinal Barrier Function.
PMID: 32652144
Gastroenterology · 2020
0.70
5
In vivo CRISPR screens identify modifiers of CAR T cell function in myeloma.
PMID: 40993381
Nature · 2025
0.68