HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
26 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PPM1D
protein phosphatase, Mg2+/Mn2+ dependent 1D
Chromosome 17 Β· 17q23.2
NCBI Gene: 8493Ensembl: ENSG00000170836.14HGNC: HGNC:9277UniProt: A0A0S2Z4M2
185PubMed Papers
23Diseases
0Drugs
68Pathogenic Variants
RESEARCH IMPACT
TrendingVariant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
negative regulation of gene expression, epigeneticmitogen-activated protein kinase bindingcytosolpeptidyl-threonine dephosphorylationintellectual developmental disorder with gastrointestinal difficulties and high pain thresholdgenetic disorderneurodegenerative diseasehereditary breast carcinoma
✦AI Summary

PPM1D encodes a protein phosphatase that plays a critical role in DNA damage response and cell cycle regulation. The protein functions primarily as a negative regulator of the p53 pathway by dephosphorylating key residues including Ser-15 of TP53 and Ser-345 of CHEK1, thereby contributing to the relief of p53-dependent cell cycle arrest 12. PPM1D also mediates dephosphorylation and inactivation of MAPK14 3. Clinically, PPM1D mutations are highly significant in cancer biology, particularly in clonal hematopoiesis of indeterminate potential (CHIP), where they account for a substantial portion of mutations alongside other DNA damage repair genes 4. PPM1D mutations drive clonal expansion specifically in response to cytotoxic chemotherapy, with mutated cells showing increased resistance to apoptosis after DNA damage 5. These mutations are strongly correlated with cisplatin exposure and are found in one-fifth of patients with therapy-related acute myeloid leukemia 56. Additionally, PPM1D has been identified as a driver gene in papillary thyroid carcinoma 7 and shows protective effects against ischemic stroke, where gain-of-function mutations are associated with better clinical outcomes 8.

Sources cited
1
PPM1D dephosphorylates Ser-15 of TP53
PMID: 15870257
2
PPM1D dephosphorylates Ser-345 of CHEK1 contributing to functional inactivation
PMID: 16311512
3
PPM1D mediates MAPK14 dephosphorylation and inactivation
PMID: 21283629
4
PPM1D is one of the DNA damage repair genes frequently mutated in CHIP
PMID: 34298011
5
PPM1D mutations drive clonal hematopoiesis in response to cytotoxic chemotherapy and are found in one-fifth of therapy-related leukemia patients
PMID: 30388424
6
DNA damage response genes including PPM1D are preferentially selected by certain cancer therapies
PMID: 33106634
7
PPM1D is identified as a driver gene in papillary thyroid carcinoma
PMID: 25417114
8
Gain-of-function PPM1D mutations are associated with better stroke outcomes and protective effects
PMID: 40399534
Disease Associationsβ“˜23
intellectual developmental disorder with gastrointestinal difficulties and high pain thresholdOpen Targets
0.78Strong
genetic disorderOpen Targets
0.53Moderate
neurodegenerative diseaseOpen Targets
0.51Moderate
Hereditary breast cancerOpen Targets
0.51Moderate
hereditary breast carcinomaOpen Targets
0.51Moderate
ovarian carcinomaOpen Targets
0.41Moderate
malignant gliomaOpen Targets
0.37Weak
colorectal adenocarcinomaOpen Targets
0.37Weak
syndromic intellectual disabilityOpen Targets
0.37Weak
essential thrombocythemiaOpen Targets
0.37Weak
Brain Stem GlioblastomaOpen Targets
0.37Weak
breast ductal adenocarcinomaOpen Targets
0.37Weak
carcinoma of liver and intrahepatic biliary tractOpen Targets
0.37Weak
Endometrial Endometrioid AdenocarcinomaOpen Targets
0.37Weak
Hepatobiliary NeoplasmOpen Targets
0.37Weak
HER2 Positive Breast CarcinomaOpen Targets
0.37Weak
pilocytic astrocytomaOpen Targets
0.37Weak
skin basal cell carcinomaOpen Targets
0.37Weak
Neurodevelopmental delayOpen Targets
0.34Weak
autosomal dominant non-syndromic intellectual disabilityOpen Targets
0.34Weak
Breast cancerUniProt
Jansen-de Vries syndromeUniProt
Ovarian cancerUniProt
Pathogenic Variants68
NM_003620.4(PPM1D):c.1270dup (p.Glu424fs)Pathogenic
Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold
β˜…β˜…β˜†β˜†2025β†’ Residue 424
NM_003620.4(PPM1D):c.1277del (p.Pro426fs)Pathogenic
Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 426
NM_003620.4(PPM1D):c.1210C>T (p.Gln404Ter)Pathogenic
not provided|Inborn genetic diseases|Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold
β˜…β˜…β˜†β˜†2025β†’ Residue 404
NM_003620.4(PPM1D):c.1535del (p.Asn512fs)Pathogenic
not provided|Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold|Familial cancer of breast
β˜…β˜…β˜†β˜†2025β†’ Residue 512
NM_003620.4(PPM1D):c.1216del (p.Thr406fs)Pathogenic
Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold|Inborn genetic diseases|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 406
NM_003620.4(PPM1D):c.1281G>A (p.Trp427Ter)Pathogenic
Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold|Familial cancer of breast;Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold
β˜…β˜…β˜†β˜†2024β†’ Residue 427
NM_003620.4(PPM1D):c.1280G>A (p.Trp427Ter)Pathogenic
not provided|Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold
β˜…β˜…β˜†β˜†2024β†’ Residue 427
NM_003620.4(PPM1D):c.1384C>T (p.Gln462Ter)Likely pathogenic
Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 462
NM_003620.4(PPM1D):c.1267G>T (p.Glu423Ter)Pathogenic
not provided|Familial cancer of breast
β˜…β˜…β˜†β˜†2023β†’ Residue 423
NM_003620.4(PPM1D):c.1262C>G (p.Ser421Ter)Pathogenic
Inborn genetic diseases|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 421
NM_003620.4(PPM1D):c.1221T>A (p.Cys407Ter)Pathogenic
Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold|not provided
β˜…β˜…β˜†β˜†2022β†’ Residue 407
NM_003620.4(PPM1D):c.1606del (p.Arg536fs)Likely pathogenic
Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold
β˜…β˜…β˜†β˜†2021β†’ Residue 536
NM_003620.4(PPM1D):c.1237_1238del (p.Pro413fs)Likely pathogenic
not provided|Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold
β˜…β˜…β˜†β˜†2020β†’ Residue 413
NM_003620.4(PPM1D):c.1293_1294del (p.Asn431_Ser432insTer)Likely pathogenic
Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold
β˜…β˜†β˜†β˜†2026β†’ Residue 431
NM_003620.4(PPM1D):c.1455del (p.Ile486fs)Pathogenic
Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold
β˜…β˜†β˜†β˜†2026β†’ Residue 486
NM_003620.4(PPM1D):c.1437dup (p.Lys480Ter)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2026β†’ Residue 480
NM_003620.4(PPM1D):c.1281del (p.Trp427fs)Likely pathogenic
Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold
β˜…β˜†β˜†β˜†2026β†’ Residue 427
NM_003620.4(PPM1D):c.1601_1603del (p.Phe534_Lys535delinsTer)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 534
NM_003620.4(PPM1D):c.1280_1281insT (p.Trp427fs)Pathogenic
Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold
β˜…β˜†β˜†β˜†2025β†’ Residue 427
NM_003620.4(PPM1D):c.1451T>G (p.Leu484Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 484
View on ClinVar β†—
Related Genes
TP53Protein interaction100%CHEK1Protein interaction100%ATMProtein interaction100%CHEK2Protein interaction98%APPBP2Protein interaction90%H2AXProtein interaction89%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
82%
Brain
74%
Lung
51%
Heart
34%
Liver
29%
Gene Interaction Network
Click a node to explore
PPM1DTP53CHEK1ATMCHEK2APPBP2H2AX
PROTEIN STRUCTURE
Preparing viewer…
PDB8T2J Β· 1.80 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.18LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.94 [0.75–1.18]
RankingsWhere PPM1D stands among ~20K protein-coding genes
  • #2,333of 20,598
    Most Researched185 Β· top quartile
  • #1,065of 5,498
    Most Pathogenic Variants68 Β· top quartile
  • #12,408of 17,882
    Most Constrained (LOEUF)1.18
Genes detectedPPM1D
Sources retrieved26 papers
Response timeβ€”
πŸ“„ Sources
26β–Ό
1
Integrated genomic characterization of papillary thyroid carcinoma.
PMID: 25417114
Cell Β· 2014
1.00
2
Prevalence and architecture of de novo mutations in developmental disorders.
PMID: 28135719
Nature Β· 2017
0.90
3
Clonal hematopoiesis of indeterminate potential (CHIP): Linking somatic mutations, hematopoiesis, chronic inflammation and cardiovascular disease.
PMID: 34298011
J Mol Cell Cardiol Β· 2021
0.80
4
Gain-of-function PPM1D mutations attenuate ischemic stroke.
PMID: 40399534
Cell Death Differ Β· 2025
0.70
5
Clonal Hematopoiesis of Indeterminate Potential Predicts Adverse Outcomes in Patients With Atherosclerotic Cardiovascular Disease.
PMID: 37197843
J Am Coll Cardiol Β· 2023
0.64