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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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PPP3CB
protein phosphatase 3 catalytic subunit beta
Chromosome 10 · 10q22.2
NCBI Gene: 5532Ensembl: ENSG00000107758.17HGNC: HGNC:9315UniProt: B7Z781
104PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedHub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein dephosphorylationcalcium ion bindingprotein bindingcalmodulin bindingneurodegenerative diseaseAbnormality of the skeletal systemAlzheimer diseaseParkinson disease
✦AI Summary

PPP3CB (protein phosphatase 3 catalytic subunit beta) is a calcium-dependent, calmodulin-stimulated serine/threonine phosphatase located on chromosome 10-q22 1 that serves as a critical hub for calcium-mediated signal transduction. As the catalytic subunit of calcineurin, PPP3CB dephosphorylates key transcription factors to regulate cellular responses 2. In lysosomal homeostasis, PPP3CB dephosphorylates TFEB (transcription factor EB) in response to calcium signals, enabling its nuclear translocation and activation of lysosomal biogenesis genes 345. SMURF1 acts as a positive regulator of PPP3CB activity by promoting dissociation of its autoinhibitory domain and facilitating K63-linked ubiquitination at lysine 146, enhancing TFEB recruitment 45. PPP3CB also activates NFATC1 and inactivates ELK1 transcription factors 2. Beyond autophagy regulation, PPP3CB functions in pancreatic cancer suppression by promoting ATOH8 nuclear translocation and transcriptional inhibition of the oncogenic factor Sp1 67. Clinically, PPP3CB overexpression in neuroblastoma correlates with poor prognosis through NFAT pathway activation and c-Myc/MYCN upregulation, making calcineurin inhibitors (cyclosporin A, FK506) potential therapeutic agents 8.

Sources cited
1
PPP3CB (protein phosphatase 3 catalytic subunit beta) is a calcium-dependent, calmodulin-stimulated serine/threonine phosphatase located on chromosome 10-q22 that serves as a critical hub for calcium-mediated signal transduction.
PMID: 8978785
2
As the catalytic subunit of calcineurin, PPP3CB dephosphorylates key transcription factors to regulate cellular responses .
PMID: 19154138
3
Clinically, PPP3CB overexpression in neuroblastoma correlates with poor prognosis through NFAT pathway activation and c-Myc/MYCN upregulation, making calcineurin inhibitors (cyclosporin A, FK506) potential therapeutic agents .
PMID: 30457174
⚠Limited data available — This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.41Moderate
Abnormality of the skeletal systemOpen Targets
0.22Weak
Alzheimer diseaseOpen Targets
0.15Weak
lysosomal storage diseaseOpen Targets
0.15Weak
multiple sclerosisOpen Targets
0.15Weak
Parkinson diseaseOpen Targets
0.15Weak
Chronic mucocutaneous candidosisOpen Targets
0.10Weak
Okt4 epitope deficiencyOpen Targets
0.08Suggestive
Alymphoid cystic thymic dysgenesisOpen Targets
0.07Suggestive
22q11.2 deletion syndromeOpen Targets
0.07Suggestive
Wiskott-Aldrich syndromeOpen Targets
0.07Suggestive
severe combined immunodeficiency due to CARD11 deficiencyOpen Targets
0.07Suggestive
reticular dysgenesisOpen Targets
0.07Suggestive
combined immunodeficiency with skin granulomasOpen Targets
0.07Suggestive
pachyonychia congenitaOpen Targets
0.07Suggestive
immunodeficiency 15aOpen Targets
0.06Suggestive
X-Linked Combined Immunodeficiency DiseasesOpen Targets
0.06Suggestive
hyper-IgM syndrome type 3Open Targets
0.06Suggestive
T-cell immunodeficiency, congenital alopecia, and nail dystrophyOpen Targets
0.06Suggestive
immunodeficiency 19Open Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
BADProtein interaction100%RCAN1Protein interaction100%FKBP1AProtein interaction100%NFATC1Protein interaction100%NFATC2Protein interaction100%NFATC3Protein interaction100%
Tissue Expression6 tissues
Brain
100%
Heart
42%
Ovary
28%
Lung
18%
Bone Marrow
14%
Liver
12%
Gene Interaction Network
Click a node to explore
PPP3CBBADRCAN1FKBP1ANFATC1NFATC2NFATC3
PROTEIN STRUCTURE
Preparing viewer…
PDB4OR9 · 2.23 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.25Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.14 [0.08–0.25]
RankingsWhere PPP3CB stands among ~20K protein-coding genes
  • #4,607of 20,598
    Most Researched104 · top quartile
  • #792of 17,882
    Most Constrained (LOEUF)0.25 · top 5%
Genes detectedPPP3CB
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Trehalose induces autophagy via lysosomal-mediated TFEB activation in models of motoneuron degeneration.
PMID: 30335591
Autophagy · 2019
1.00
2
SMURF1 controls the PPP3/calcineurin complex and TFEB at a regulatory node for lysosomal biogenesis.
PMID: 37909662
Autophagy · 2024
0.90
3
SMURF1 mediates damaged lysosomal homeostasis by ubiquitinating PPP3CB to promote the activation of TFEB.
PMID: 39324484
Autophagy · 2025
0.80
4
LRRK2 is required for CD38-mediated NAADP-Ca
PMID: 34313548
Autophagy · 2022
0.70
5
PPP3CB inhibits pancreatic cancer progression by promoting ATOH8 translocation and transcriptionally regulating Sp1.
PMID: 40222712
Life Sci · 2025
0.60