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GeneE
50 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PSEN1
presenilin 1
Chromosome 14 Β· 14q24.2
NCBI Gene: 5663Ensembl: ENSG00000080815.21HGNC: HGNC:9508UniProt: A0A024R6A3
879PubMed Papers
25Diseases
7Drugs
143Pathogenic Variants
FUNCTIONAL ROLE
Hub GeneProtease
RESEARCH IMPACT
Highly StudiedVariant-Rich
CLINICAL
FDA Approved TargetOMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
memorycell-cell adhesionsmooth endoplasmic reticulumendopeptidase activityAlzheimer disease 3acne inversa, familial, 3Pick diseasefrontotemporal dementia
✦AI Summary

PSEN1 encodes presenilin 1, the catalytic subunit of the gamma-secretase complex that cleaves integral membrane proteins including APP and Notch receptors 1. As part of this multiprotein complex, PSEN1 regulates amyloid-beta generation and multiple signaling cascades critical for neural development 1. Beyond proteolysis, PSEN1 functions as a calcium-leak channel regulating endoplasmic reticulum-to-cytosol calcium flux and modulates cell-cell adhesion through E-cadherin stabilization 1. PSEN1 mutations cause early-onset Alzheimer's disease (EOAD), accounting for ~5-10% of AD cases, with over 300 pathogenic variants identified 1. Mechanistically, PSEN1 mutations shift APP processing toward amyloidogenic AΞ²42 production and impair autophagy and chaperone responses 2. Disease manifestations extend beyond classical EOAD: atypical phenotypes include spastic paraparesis, seizures, visual impairment, frontotemporal dementia, Parkinson's disease, and dementia with Lewy bodies 3. Non-neurodegenerative phenotypes associated with PSEN1 mutations include acne inversa and dilated cardiomyopathy 34. Genetic modifiers appear critical in determining disease onset age and clinical presentation 1. Recent studies using cerebral organoids and single-nucleus sequencing reveal premature neuronal differentiation and dysregulated chaperone-mediated autophagy in PSEN1-mutant cells 52, providing insights for therapeutic development.

Sources cited
1
PSEN1 is part of Ξ³-secretase complex involved in APP cleavage, Notch signaling, and calcium metabolism; over 300 mutations cause EOAD with diverse phenotypes including spasticity, seizures, and visual impairment
PMID: 36142879
2
PSEN1-E280A mutations activate autophagy genes and chaperones; genetic modifiers like APOE3-Christchurch and LRP1 expression affect disease protection
PMID: 38417436
3
Cerebral organoids from PSEN1 mutation carriers show tissue patterning defects and premature neuronal differentiation
PMID: 37864790
4
PSEN1 mutations associated with atypical phenotypes including frontotemporal dementia, Parkinson's disease, dementia with Lewy bodies, spastic paraparesis, acne inversa, and dilated cardiomyopathy
PMID: 37176125
5
PSEN1-P242LfsX11 mutation causes acne inversa and mediates cytokine and chemokine expression in macrophages
PMID: 30544224
6
PSEN1 is a monogenic cause of dementia; genetic screening and counseling important for neurodegenerative dementias
PMID: 39620845
Disease Associationsβ“˜25
Alzheimer disease 3Open Targets
0.84Strong
acne inversa, familial, 3Open Targets
0.73Strong
Pick diseaseOpen Targets
0.72Strong
frontotemporal dementiaOpen Targets
0.69Moderate
semantic dementiaOpen Targets
0.67Moderate
dilated cardiomyopathy 1UOpen Targets
0.64Moderate
dilated cardiomyopathyOpen Targets
0.62Moderate
Alzheimer diseaseOpen Targets
0.61Moderate
early-onset autosomal dominant Alzheimer diseaseOpen Targets
0.58Moderate
Desmoid-type fibromatosisOpen Targets
0.48Moderate
dementiaOpen Targets
0.48Moderate
neoplasmOpen Targets
0.42Moderate
Mental deteriorationOpen Targets
0.41Moderate
DystoniaOpen Targets
0.37Weak
behavioral variant of frontotemporal dementiaOpen Targets
0.37Weak
familial isolated dilated cardiomyopathyOpen Targets
0.37Weak
progressive non-fluent aphasiaOpen Targets
0.37Weak
Spastic paraparesisOpen Targets
0.35Weak
familial Alzheimer diseaseOpen Targets
0.35Weak
Abnormality of the nervous systemOpen Targets
0.34Weak
Acne inversa, familial, 3UniProt
Alzheimer disease 3UniProt
Cardiomyopathy, dilated, 1UUniProt
Frontotemporal dementia 1UniProt
Pick disease of the brainUniProt
Pathogenic Variants143
NM_000021.4(PSEN1):c.806G>A (p.Arg269His)Pathogenic
Alzheimer disease 4|not provided|Alzheimer disease 3;Pick disease;Frontotemporal dementia;Acne inversa, familial, 3
β˜…β˜…β˜†β˜†2026β†’ Residue 269
NM_000021.4(PSEN1):c.617G>C (p.Gly206Ala)Pathogenic
Alzheimer disease 3|Frontotemporal dementia;Alzheimer disease 3;Acne inversa, familial, 3;Pick disease|not provided|Frontotemporal dementia;Alzheimer disease 3;Acne inversa, familial, 3;Dilated cardiomyopathy 1U;Pick disease|PSEN1-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 206
NM_000021.4(PSEN1):c.1292C>A (p.Ala431Glu)Pathogenic
Alzheimer disease 3|not provided|Frontotemporal dementia;Alzheimer disease 3;Acne inversa, familial, 3;Pick disease|Frontotemporal dementia;Alzheimer disease 3;Acne inversa, familial, 3;Dilated cardiomyopathy 1U;Pick disease
β˜…β˜…β˜†β˜†2025β†’ Residue 431
NM_000021.4(PSEN1):c.856C>G (p.Leu286Val)Pathogenic
Alzheimer disease 3|not provided|Early-onset autosomal dominant Alzheimer disease
β˜…β˜…β˜†β˜†2025β†’ Residue 286
NM_000021.4(PSEN1):c.347C>A (p.Thr116Asn)Pathogenic
Alzheimer disease 3;Acne inversa, familial, 3;Pick disease;Frontotemporal dementia|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 116
NM_000021.4(PSEN1):c.506C>T (p.Ser169Leu)Pathogenic
not provided|Alzheimer disease 3;Acne inversa, familial, 3;Frontotemporal dementia;Pick disease|Alzheimer disease 3
β˜…β˜…β˜†β˜†2025β†’ Residue 169
NM_000021.4(PSEN1):c.488A>G (p.His163Arg)Pathogenic
Alzheimer disease 3|not provided|Frontotemporal dementia;Alzheimer disease 3;Acne inversa, familial, 3;Pick disease|Frontotemporal dementia;Alzheimer disease 3;Acne inversa, familial, 3;Dilated cardiomyopathy 1U;Pick disease|PSEN1-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 163
NM_000021.4(PSEN1):c.737C>A (p.Ala246Glu)Pathogenic
Alzheimer disease 3|not provided|Frontotemporal dementia;Alzheimer disease 3;Acne inversa, familial, 3;Pick disease
β˜…β˜…β˜†β˜†2025β†’ Residue 246
NM_000021.4(PSEN1):c.784T>G (p.Leu262Val)Pathogenic
Alzheimer disease 3|Pick disease;Acne inversa, familial, 3;Frontotemporal dementia;Alzheimer disease 3
β˜…β˜…β˜†β˜†2025β†’ Residue 262
NM_000021.4(PSEN1):c.617G>T (p.Gly206Val)Pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 206
NM_000021.4(PSEN1):c.845T>C (p.Leu282Pro)Pathogenic
Acne inversa, familial, 3;Pick disease;Frontotemporal dementia;Alzheimer disease 3|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 282
NM_000021.4(PSEN1):c.745A>C (p.Ile249Leu)Pathogenic
not provided|Alzheimer disease 3;Acne inversa, familial, 3;Frontotemporal dementia;Pick disease|PSEN1-related disorder|Alzheimer disease 3
β˜…β˜…β˜†β˜†2025β†’ Residue 249
NM_000021.4(PSEN1):c.436A>C (p.Met146Leu)Pathogenic
Alzheimer disease 3|Frontotemporal dementia;Alzheimer disease 3;Acne inversa, familial, 3;Pick disease|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 146
NM_000021.4(PSEN1):c.236C>T (p.Ala79Val)Pathogenic
Alzheimer disease 3|not provided|Frontotemporal dementia;Alzheimer disease 3;Acne inversa, familial, 3;Pick disease|Dementia
β˜…β˜…β˜†β˜†2025β†’ Residue 79
NM_000021.4(PSEN1):c.649G>C (p.Gly217Arg)Likely pathogenic
Alzheimer disease, familial, 3, with unusual plaques|Frontotemporal dementia;Alzheimer disease 3;Acne inversa, familial, 3;Pick disease|Alzheimer disease 3
β˜…β˜…β˜†β˜†2025β†’ Residue 217
NM_000021.4(PSEN1):c.416T>A (p.Met139Lys)Pathogenic
Pick disease;Acne inversa, familial, 3;Alzheimer disease 3;Frontotemporal dementia|Alzheimer disease 3
β˜…β˜…β˜†β˜†2025β†’ Residue 139
NM_000021.4(PSEN1):c.791C>T (p.Pro264Leu)Pathogenic
not provided|Dementia;Mental deterioration|Alzheimer disease 3;Acne inversa, familial, 3;Frontotemporal dementia;Pick disease
β˜…β˜…β˜†β˜†2025β†’ Residue 264
NM_000021.4(PSEN1):c.530T>C (p.Phe177Ser)Pathogenic
not provided|Alzheimer disease 3;Acne inversa, familial, 3;Frontotemporal dementia;Pick disease|Alzheimer disease 3
β˜…β˜…β˜†β˜†2024β†’ Residue 177
NM_000021.4(PSEN1):c.799C>A (p.Pro267Thr)Pathogenic
Alzheimer disease 3|Alzheimer disease 3;Acne inversa, familial, 3;Frontotemporal dementia;Pick disease
β˜…β˜…β˜†β˜†2024β†’ Residue 267
NM_000021.4(PSEN1):c.786G>C (p.Leu262Phe)Pathogenic
not provided|Alzheimer disease 3|Alzheimer disease 3;Acne inversa, familial, 3;Frontotemporal dementia;Pick disease
β˜…β˜…β˜†β˜†2024β†’ Residue 262
View on ClinVar β†—
Drug Targets7
AVAGACESTATPhase II
Gamma-secretase inhibitor
Alzheimer disease
BEGACESTATPhase I
Gamma-secretase inhibitor
Alzheimer disease
NIROGACESTATApproved
Gamma-secretase inhibitor
NIROGACESTAT HYDROBROMIDEApproved
Gamma-secretase inhibitor
RG-4733Phase II
Gamma-secretase inhibitor
breast cancer
SEMAGACESTATPhase III
Gamma-secretase inhibitor
Parkinson disease
TARENFLURBILPhase III
Gamma-secretase modulator
Alzheimer disease
Related Genes
CDK5Protein interaction100%BACE2Protein interaction100%TREM2Protein interaction100%SORL1Protein interaction100%TRAF6Protein interaction99%CDH1Protein interaction98%
Tissue Expression6 tissues
Brain
100%
Lung
49%
Bone Marrow
43%
Heart
35%
Ovary
34%
Liver
32%
Gene Interaction Network
Click a node to explore
PSEN1CDK5BACE2TREM2SORL1TRAF6CDH1
PROTEIN STRUCTURE
Preparing viewer…
PDB8KCS Β· 2.40 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.42Moderately Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.27 [0.17–0.42]
RankingsWhere PSEN1 stands among ~20K protein-coding genes
  • #202of 20,598
    Most Researched879 Β· top 1%
  • #499of 1,025
    FDA-Approved Drug Targets2
  • #527of 5,498
    Most Pathogenic Variants143 Β· top 10%
  • #2,258of 17,882
    Most Constrained (LOEUF)0.42 Β· top quartile
Genes detectedPSEN1
Sources retrieved50 papers
Response timeβ€”
πŸ“„ Sources
50β–Ό
1
Cerebral organoids derived from patients with Alzheimer's disease with PSEN1/2 mutations have defective tissue patterning and altered development.
PMID: 37864790
Cell Rep Β· 2023
1.00
2
Single-nucleus RNA sequencing demonstrates an autosomal dominant Alzheimer's disease profile and possible mechanisms of disease protection.
PMID: 38417436
Neuron Β· 2024
0.90
3
Alzheimer's disease-related presenilins are key to intestinal epithelial cell function and gut immune homoeostasis.
PMID: 38684238
Gut Β· 2024
0.88
4
Alzheimer-mutant Ξ³-secretase complexes stall amyloid Ξ²-peptide production.
PMID: 39932776
Elife Β· 2025
0.86
5
[Alzheimer disease].
PMID: 12013901
Nihon Rinsho Β· 2002
0.84