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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
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PTDSS1
phosphatidylserine synthase 1
Chromosome 8 Β· 8q22.1
NCBI Gene: 9791Ensembl: ENSG00000156471.14HGNC: HGNC:9587UniProt: P48651
93PubMed Papers
21Diseases
0Drugs
8Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
phosphatidylserine biosynthetic processL-serine-phosphatidylethanolamine phosphatidyltransferase activityL-serine-phosphatidylcholine phosphatidyltransferase activitymembraneLenz-Majewski hyperostotic dwarfismneurodegenerative diseaseAlzheimer diseaseParkinson disease
✦AI Summary

PTDSS1 (phosphatidylserine synthase 1) catalyzes a base-exchange reaction replacing the polar head group of phosphatidylcholine (PC) or phosphatidylethanolamine (PE) with L-serine, primarily converting PC to phosphatidylserine (PS) 12. This enzyme localizes to the endoplasmic reticulum membrane and functions as a membrane-bound transferase. Mechanistically, PTDSS1 contains 10 transmembrane helices with a catalytic core in the luminal leaflet, operating similarly to membrane-bound O-acyltransferase family members 3. PS produced by PTDSS1 mediates immunosuppressive signaling, and loss of PTDSS1 increases interferon-Ξ³-regulated genes and MHC-I expression, enhancing CD8+ T cell cytotoxicity 4. PTDSS1 also promotes aerobic glycolysis and malignant progression through PKM2-mediated nuclear-mitochondrial crosstalk 5. Clinically, gain-of-function PTDSS1 mutations cause Lenz-Majewski hyperostotic dwarfism, characterized by cutis laxa, skeletal dysplasia, and intellectual disability 6. In cancer, PTDSS1 is upregulated in esophageal squamous cell carcinoma, lung cancer, and bladder carcinoma with poor prognostic implications 78. PTDSS1 inhibition emerges as a therapeutic strategy, improving anti-PD-1 immunotherapy response and potentially lowering blood cholesterol through LDL receptor upregulation 43. Targeting PTDSS1 also reduces tumor-associated macrophage infiltration and tumor growth 9.

Sources cited
1
PTDSS1 catalyzes base-exchange reaction converting PC and PE to PS
PMID: 19014349
2
PTDSS1 primarily catalyzes conversion of PC to PS
PMID: 24241535
3
PTDSS1 structure contains 10 transmembrane helices with catalytic core; inhibition activates SREBP pathway and increases LDL uptake
PMID: 39208797
4
PTDSS1 loss increases IFN-Ξ³-regulated genes, MHC-I expression, and enhances anti-PD-1 therapy response
PMID: 40929270
5
PTDSS1 promotes glycolysis and lung cancer progression through PKM2-mediated nuclear-mitochondrial crosstalk
PMID: 41074449
6
Gain-of-function PTDSS1 mutations cause Lenz-Majewski syndrome with cutis laxa and hyperostotic skeletal dysplasia
PMID: 29341480
7
PTDSS1 is significantly upregulated in esophageal squamous cell carcinoma with high diagnostic value
PMID: 35287685
8
High PTDSS1 expression correlates with poor prognosis in bladder urothelial carcinoma
PMID: 35503998
9
PTDSS1 produces ether-PS in tumors; depletion reduces tumor-associated macrophage infiltration and tumor growth
PMID: 35425959
Disease Associationsβ“˜21
Lenz-Majewski hyperostotic dwarfismOpen Targets
0.77Strong
neurodegenerative diseaseOpen Targets
0.51Moderate
Alzheimer diseaseOpen Targets
0.44Moderate
Parkinson diseaseOpen Targets
0.44Moderate
lysosomal storage diseaseOpen Targets
0.44Moderate
multiple sclerosisOpen Targets
0.44Moderate
smoking initiationOpen Targets
0.30Weak
mouth diseaseOpen Targets
0.28Weak
genetic disorderOpen Targets
0.19Weak
microcephalyOpen Targets
0.11Weak
neoplasmOpen Targets
0.09Suggestive
bladder transitional cell carcinomaOpen Targets
0.08Suggestive
hepatocellular carcinomaOpen Targets
0.07Suggestive
cancerOpen Targets
0.07Suggestive
familial hypobetalipoproteinemia 2Open Targets
0.06Suggestive
Platelet-activating factor acetylhydrolase deficiencyOpen Targets
0.06Suggestive
apolipoprotein c-III deficiencyOpen Targets
0.06Suggestive
hypertriglyceridemia 2Open Targets
0.05Suggestive
22q11.2 deletion syndromeOpen Targets
0.04Suggestive
Combined hyperlipidemiaOpen Targets
0.04Suggestive
Lenz-Majewski hyperostotic dwarfismUniProt
Pathogenic Variants8
NM_014754.3(PTDSS1):c.284G>A (p.Arg95Gln)Pathogenic
not provided|Lenz-Majewski hyperostosis syndrome
β˜…β˜…β˜†β˜†2024β†’ Residue 95
NM_014754.3(PTDSS1):c.283C>G (p.Arg95Gly)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 95
NM_014754.3(PTDSS1):c.848C>T (p.Ser283Phe)Likely pathogenic
Lenz-Majewski hyperostosis syndrome
β˜…β˜†β˜†β˜†2019β†’ Residue 283
NM_014754.3(PTDSS1):c.421A>G (p.Thr141Ala)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2016β†’ Residue 141
NM_014754.3(PTDSS1):c.1058A>G (p.Gln353Arg)Pathogenic
Lenz-Majewski hyperostosis syndrome
β˜…β˜†β˜†β˜†β†’ Residue 353
NM_014754.3(PTDSS1):c.806C>T (p.Pro269Leu)Pathogenic
Lenz-Majewski hyperostosis syndrome
β˜†β˜†β˜†β˜†2025β†’ Residue 269
NM_014754.3(PTDSS1):c.794T>C (p.Leu265Pro)Pathogenic
Lenz-Majewski hyperostosis syndrome
β˜†β˜†β˜†β˜†2014β†’ Residue 265
NM_014754.3(PTDSS1):c.805C>T (p.Pro269Ser)Pathogenic
Lenz-Majewski hyperostosis syndrome
β˜†β˜†β˜†β˜†2014β†’ Residue 269
View on ClinVar β†—
Related Genes
PISDProtein interaction98%PEMTProtein interaction97%LPCAT2Protein interaction96%LPCAT3Protein interaction96%LPCAT1Protein interaction96%PTDSS2Protein interaction96%
Tissue Expression6 tissues
Heart
100%
Bone Marrow
41%
Brain
32%
Liver
31%
Lung
28%
Ovary
25%
Gene Interaction Network
Click a node to explore
PTDSS1PISDPEMTLPCAT2LPCAT3LPCAT1PTDSS2
PROTEIN STRUCTURE
Preparing viewer…
PDB9B4E Β· 2.70 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.78LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.60 [0.47–0.78]
RankingsWhere PTDSS1 stands among ~20K protein-coding genes
  • #5,162of 20,598
    Most Researched93
  • #3,058of 5,498
    Most Pathogenic Variants8
  • #6,319of 17,882
    Most Constrained (LOEUF)0.78
Genes detectedPTDSS1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Untargeted metabolomics analysis of esophageal squamous cell cancer progression.
PMID: 35287685
J Transl Med Β· 2022
1.00
2
Biochemistry and Diseases Related to the Interconversion of Phosphatidylcholine, Phosphatidylethanolamine, and Phosphatidylserine.
PMID: 39409074
Int J Mol Sci Β· 2024
0.90
3
Loss of PTDSS1 in tumor cells improves immunogenicity and response to anti-PD-1 therapy.
PMID: 40929270
Sci Adv Β· 2025
0.80
4
Molecular insights into human phosphatidylserine synthase 1 reveal its inhibition promotes LDL uptake.
PMID: 39208797
Cell Β· 2024
0.70
5
Phosphatidylserine Synthase PTDSS1 Shapes the Tumor Lipidome to Maintain Tumor-Promoting Inflammation.
PMID: 35425959
Cancer Res Β· 2022
0.60