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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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PTP4A2
protein tyrosine phosphatase 4A2
Chromosome 1 · 1p35.2
NCBI Gene: 8073Ensembl: ENSG00000184007.22HGNC: HGNC:9635UniProt: Q12974
63PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly Constrained
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingcytoplasmprotein tyrosine phosphatase activitynucleusneurodegenerative diseaseoral mucosa leukoplakiadyshidrosisneuroinflammatory disorder
✦AI Summary

PTP4A2 (protein tyrosine phosphatase 4A2) is a member of the Phosphatase of Regenerative Liver (PRL) family that functions as an oncogenic driver across multiple cancer types. Mechanistically, PTP4A2 operates through dephosphorylation-dependent signaling axes; in glioblastoma, it modulates the ROBO1 pathway to promote self-renewal and tumorigenicity 1, while in hepatocellular carcinoma it contributes to proliferation, migration, and invasion 2. Beyond intrinsic tumor cell functions, PTP4A2 significantly impacts the tumor microenvironment, with deletion increasing apoptosis and proinflammatory signals while reducing immunosuppression in glioblastoma models 3. In normal physiology, PTP4A2 regulates vascular development through VEGF-A and DLL-4/NOTCH-1 signaling, controlling endothelial cell migration and sprouting angiogenesis 4. Disease relevance is substantial: high PTP4A2 expression correlates with poor prognosis in gliomas and hepatocellular carcinoma 32. Clinically, PTP4A2 represents a therapeutic target; pharmacological inhibition via pan-PTP4A inhibitors like JMS-053 suppresses tumor growth 3, and ROBO1-targeted CAR T cell therapy exploiting PTP4A-ROBO1 dependency doubled survival in recurrent glioblastoma models 1. However, compensatory mechanisms among PTP4A family members may limit selective PTP4A2 inhibition 5.

Sources cited
1
PTP4A2 modulates self-renewal, proliferation and tumorigenicity in recurrent GBM through dephosphorylation of ROBO1 signaling pathway
PMID: 39095594
2
PTP4A2 overexpression promotes GBM tumor growth and poor prognosis; deletion increases apoptosis and proinflammatory signals
PMID: 38904264
3
PTP4A2 is a risk gene associated with poor prognosis in hepatocellular carcinoma; silencing suppresses proliferation, migration and invasion
PMID: 40416605
4
PTP4A2 encoded by Ptp4a2 gene regulates vascular development through VEGF-A and DLL-4/NOTCH-1 signaling in endothelial cells
PMID: 33097786
5
Compensatory mechanisms from PTP4A1 and PTP4A2 can arise when specifically targeting PTP4A3, mitigated by pan-PTP4A inhibition
PMID: 40657934
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.41Moderate
oral mucosa leukoplakiaOpen Targets
0.32Weak
dyshidrosisOpen Targets
0.31Weak
neuroinflammatory disorderOpen Targets
0.22Weak
agingOpen Targets
0.17Weak
neoplasmOpen Targets
0.11Weak
breast cancerOpen Targets
0.09Suggestive
glioblastoma multiformeOpen Targets
0.08Suggestive
acute myeloid leukemiaOpen Targets
0.08Suggestive
nasopharyngeal carcinomaOpen Targets
0.08Suggestive
malariaOpen Targets
0.07Suggestive
hepatocellular carcinomaOpen Targets
0.07Suggestive
cancerOpen Targets
0.06Suggestive
leukemiaOpen Targets
0.05Suggestive
azoospermiaOpen Targets
0.04Suggestive
ring chromosome YOpen Targets
0.04Suggestive
acute lung injuryOpen Targets
0.04Suggestive
partial chromosome Y deletionOpen Targets
0.04Suggestive
isochromosomy YpOpen Targets
0.04Suggestive
spermatogenic failure 25Open Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CNNM3Protein interaction100%RABGGTBProtein interaction96%PTSProtein interaction90%PTP4A1Protein interaction90%CNNM4Protein interaction80%CNNM2Protein interaction80%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
99%
Heart
54%
Lung
48%
Ovary
36%
Liver
31%
Gene Interaction Network
Click a node to explore
PTP4A2CNNM3RABGGTBPTSPTP4A1CNNM4CNNM2
PROTEIN STRUCTURE
Preparing viewer…
PDB6WUR · 2.88 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.31Highly Constrained
pLIⓘ
0.98Intolerant
Observed/Expected LoF0.00 [0.00–0.31]
RankingsWhere PTP4A2 stands among ~20K protein-coding genes
  • #7,395of 20,598
    Most Researched63
  • #1,213of 17,882
    Most Constrained (LOEUF)0.31 · top 10%
Genes detectedPTP4A2
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Targeting axonal guidance dependencies in glioblastoma with ROBO1 CAR T cells.
PMID: 39095594
Nat Med · 2024
1.00
2
PTP4A2 Promotes Glioblastoma Progression and Macrophage Polarization under Microenvironmental Pressure.
PMID: 38904264
Cancer Res Commun · 2024
0.90
3
Physiological and oncogenic roles of the PRL phosphatases.
PMID: 29770564
FEBS J · 2018
0.80
4
Targeting of PTP4A3 overexpression sensitises HGSOC cells towards chemotherapeutic drugs.
PMID: 40657934
Mol Oncol · 2025
0.70
5
Bulk and single-cell RNA sequencing identify prognostic signatures related to FGFBP2
PMID: 40416605
PeerJ · 2025
0.60