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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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PUM3
pumilio RNA binding family member 3
Chromosome 9 · 9p24.2
NCBI Gene: 9933Ensembl: ENSG00000080608.11HGNC: HGNC:29676UniProt: Q15397
109PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA bindingnucleoplasmchromosomeendoplasmic reticulummajor depressive disorderhemolytic anemiasmoking initiationhead injury
✦AI Summary

PUM3 (Pumilio RNA binding family member 3) is an RNA and DNA binding protein that plays essential roles in cellular stress response and ribosomal biogenesis. PUM3 binds to double-stranded RNA or DNA without sequence specificity and localizes primarily to the nucleolus, where it participates in the processing of 7S to 5.8S rRNA 1. The protein contains a highly conserved Pumilio-homology domain consisting of multiple tandem repeats that facilitate RNA binding 2. Under genotoxic stress conditions, PUM3 redistributes from the nucleolus to the nucleoplasm and inhibits poly(ADP-ribosyl)ation activity of PARP1 while preventing PARP1 degradation by CASP3 1. Recent proteomic studies have identified PUM3 as an interacting partner of topoisomerase I (TOP1), with both proteins showing similar relocalization patterns following DNA damage 3. The protein's stability and cellular functions are regulated by phosphorylation, particularly at tyrosine 259, which is critical for cell proliferation and clonogenic capacity 1. PUM3 has been identified as one of 24 important genes associated with chromosome 9 deletion syndrome, suggesting developmental significance 4. Additionally, PUM3 has emerged as a hub gene in colorectal cancer networks, indicating potential roles in tumorigenesis 5.

Sources cited
1
PUM3 participates in nucleolar processing of 7S to 5.8S rRNA and redistributes to nucleoplasm under genotoxic stress
PMID: 34407138
2
PUM3 contains a highly conserved Pumilio-homology domain with tandem repeats for RNA binding
PMID: 27634438
3
PUM3 interacts with topoisomerase I and shows similar relocalization following DNA damage
PMID: 41043513
4
PUM3 is one of 24 important genes associated with chromosome 9p deletion syndrome
PMID: 40196253
5
PUM3 identified as a hub gene in colorectal cancer networks
PMID: 35194111
Disease Associationsⓘ20
major depressive disorderOpen Targets
0.32Weak
hemolytic anemiaOpen Targets
0.31Weak
smoking initiationOpen Targets
0.29Weak
head injuryOpen Targets
0.28Weak
Myasthenia gravisOpen Targets
0.28Weak
ovarian dysfunctionOpen Targets
0.28Weak
aortic diseaseOpen Targets
0.28Weak
ProptosisOpen Targets
0.26Weak
insomniaOpen Targets
0.22Weak
substance abuseOpen Targets
0.22Weak
attention deficit hyperactivity disorderOpen Targets
0.21Weak
smoking behaviorOpen Targets
0.20Weak
strokeOpen Targets
0.20Weak
mathematical abilityOpen Targets
0.20Weak
diabetes mellitusOpen Targets
0.19Weak
acute myeloid leukemiaOpen Targets
0.19Weak
HypercholesterolemiaOpen Targets
0.17Weak
cancerOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.06Suggestive
pancreatic intraductal papillary-mucinous neoplasmOpen Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
BRD10Co-mentioned in literature100%ZNG1ACo-mentioned in literature100%DKC1Protein interaction97%NOP2Protein interaction97%RBM19Protein interaction97%PPANProtein interaction97%
Tissue Expression6 tissues
Ovary
100%
Lung
87%
Bone Marrow
87%
Liver
73%
Heart
60%
Brain
39%
Gene Interaction Network
Click a node to explore
PUM3BRD10ZNG1ADKC1NOP2RBM19PPAN
PROTEIN STRUCTURE
Preparing viewer…
PDB4WZR · 2.15 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.36LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.03 [0.79–1.36]
RankingsWhere PUM3 stands among ~20K protein-coding genes
  • #4,376of 20,598
    Most Researched109 · top quartile
  • #14,223of 17,882
    Most Constrained (LOEUF)1.36
Genes detectedPUM3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Whole-Genome Sequencing Reveals Individual and Cohort Level Insights into Chromosome 9p Syndromes.
PMID: 40196253
medRxiv · 2025
1.00
2
Minor histocompatibility antigens HA-8 and PANE1 in the TUNISIAN population.
PMID: 36036171
Mol Genet Genomic Med · 2022
0.90
3
Whole-genome sequencing reveals individual and cohort level insights into chromosome 9p syndromes.
PMID: 41137173
Genome Med · 2025
0.80
4
Proteomic Analysis of Human Topoisomerases Reveals Their Distinct and Diverse Cellular Functions.
PMID: 41043513
Mol Cell Proteomics · 2025
0.70
5
Weighted correlation network analysis revealed novel long non-coding RNAs for colorectal cancer.
PMID: 35194111
Sci Rep · 2022
0.60