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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PUS7
pseudouridine synthase 7
Chromosome 7 Β· 7q22.3
NCBI Gene: 54517Ensembl: ENSG00000091127.15HGNC: HGNC:26033UniProt: B3KRB2
59PubMed Papers
21Diseases
0Drugs
33Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
RNA bindingpseudouridine synthase activityenzyme bindingregulation of hematopoietic stem cell differentiationintellectual developmental disorder with abnormal behavior, microcephaly, and short staturegenetic disorderIntellectual disabilitymicrocephaly
✦AI Summary

PUS7 is a pseudouridine synthase that catalyzes pseudouridylation, the most abundant RNA modification, across diverse RNA substrates including tRNAs, mRNAs, and non-coding RNAs 12. In embryonic stem cells, PUS7 regulates protein synthesis by pseudouridylating tRNA-derived fragments (tRFs) that inhibit translation initiation 2. Additionally, PUS7 modifies mRNAs containing the consensus sequence 5'-UGUAG-3' and mediates co-transcriptional pseudouridylation of pre-mRNAs near splice sites, directly regulating alternative splicing and 3' end processing 3. This epitranscriptomic regulation is critical for normal development, as PUS7 controls hematopoietic and mesoderm development 2. Clinically, PUS7 dysregulation is associated with cancer progression. High PUS7 expression correlates with poor glioblastoma survival, where it supports glioblastoma stem cell tumorigenesis through codon-specific translational control 4. In MYC-driven cancers, PUS7 upregulation promotes adaptive stress responses and amino acid biosynthesis by enhancing ATF4 translation 5. Conversely, tRNA-derived small RNAs can sequester PUS7 to trigger RNA autophagy, providing renoprotection in kidney disease 6. PUS7 dysfunction is also implicated in developmental disorders, including intellectual disability with microcephaly. Chemical inhibitors targeting PUS7 show preclinical therapeutic promise in glioblastoma models 4.

Sources cited
1
PUS7 catalyzes pseudouridylation of mRNAs with consensus sequence 5'-UGUAG-3'
PMID: 28073919
2
PUS7 modifies tRNA-derived fragments to regulate translation and stem cell commitment; dysregulation affects hematopoietic stem cells and myelodysplastic syndromes
PMID: 29628141
3
PUS7 catalyzes co-transcriptional pseudouridylation of pre-mRNAs near splice sites to regulate alternative splicing and 3' end processing
PMID: 35051350
4
PUS7 is highly expressed in glioblastoma, required for glioblastoma stem cell tumorigenesis, and chemical inhibitors suppress tumorigenesis
PMID: 35121864
5
MYC upregulates PUS7 to promote pseudouridylation of MCTS1 and ATF4 mRNAs, enhancing stress adaptation in cancer cells
PMID: 39240686
6
tRNA-derived small RNAs sequester PUS7 to prevent histone mRNA pseudouridylation and trigger protective RNA autophagy in kidney disease
PMID: 40674449
Disease Associationsβ“˜21
intellectual developmental disorder with abnormal behavior, microcephaly, and short statureOpen Targets
0.79Strong
genetic disorderOpen Targets
0.45Moderate
Intellectual disabilityOpen Targets
0.37Weak
microcephalyOpen Targets
0.37Weak
Atypical behaviorOpen Targets
0.37Weak
complex neurodevelopmental disorderOpen Targets
0.37Weak
Short statureOpen Targets
0.37Weak
pervasive developmental disorderOpen Targets
0.34Weak
Rare pervasive developmental disorderOpen Targets
0.34Weak
gastritisOpen Targets
0.27Weak
neoplasmOpen Targets
0.10Suggestive
colorectal carcinomaOpen Targets
0.09Suggestive
essential hypertensionOpen Targets
0.08Suggestive
glioblastoma multiformeOpen Targets
0.08Suggestive
non-small cell lung carcinomaOpen Targets
0.08Suggestive
gastric cancerOpen Targets
0.08Suggestive
triple-negative breast cancerOpen Targets
0.07Suggestive
papillary thyroid carcinomaOpen Targets
0.07Suggestive
MODYOpen Targets
0.07Suggestive
ovarian cancerOpen Targets
0.06Suggestive
Intellectual developmental disorder with abnormal behavior, microcephaly, and short statureUniProt
Pathogenic Variants33
NM_019042.5(PUS7):c.1399-1G>CPathogenic
not provided|Intellectual developmental disorder with abnormal behavior, microcephaly, and short stature
β˜…β˜…β˜†β˜†2026
NM_019042.5(PUS7):c.1507G>T (p.Asp503Tyr)Pathogenic
Intellectual developmental disorder with abnormal behavior, microcephaly, and short stature|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 503
NM_019042.5(PUS7):c.393_397del (p.Glu132fs)Pathogenic
Inborn genetic diseases|Intellectual developmental disorder with abnormal behavior, microcephaly, and short stature
β˜…β˜…β˜†β˜†2025β†’ Residue 132
NM_019042.5(PUS7):c.298_299del (p.Ser100fs)Pathogenic
Intellectual developmental disorder with abnormal behavior, microcephaly, and short stature
β˜…β˜…β˜†β˜†2025β†’ Residue 100
NM_019042.5(PUS7):c.640_641del (p.Leu214fs)Pathogenic
Intellectual developmental disorder with abnormal behavior, microcephaly, and short stature
β˜…β˜…β˜†β˜†2025β†’ Residue 214
NM_019042.5(PUS7):c.1097_1098del (p.Leu366fs)Pathogenic
Intellectual developmental disorder with abnormal behavior, microcephaly, and short stature;Pervasive developmental disorder|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 366
NM_019042.5(PUS7):c.399-2A>TLikely pathogenic
Intellectual developmental disorder with abnormal behavior, microcephaly, and short stature
β˜…β˜†β˜†β˜†2026
NM_019042.5(PUS7):c.1169T>C (p.Val390Ala)Likely pathogenic
Intellectual developmental disorder with abnormal behavior, microcephaly, and short stature
β˜…β˜†β˜†β˜†2025β†’ Residue 390
NM_019042.5(PUS7):c.1238-1G>ALikely pathogenic
Intellectual developmental disorder with abnormal behavior, microcephaly, and short stature
β˜…β˜†β˜†β˜†2025
NM_019042.5(PUS7):c.586G>T (p.Val196Phe)Likely pathogenic
Intellectual developmental disorder with abnormal behavior, microcephaly, and short stature
β˜…β˜†β˜†β˜†2025β†’ Residue 196
NM_019042.5(PUS7):c.1228C>T (p.Arg410Cys)Likely pathogenic
Intellectual developmental disorder with abnormal behavior, microcephaly, and short stature
β˜…β˜†β˜†β˜†2025β†’ Residue 410
NM_019042.5(PUS7):c.998del (p.Asn333fs)Pathogenic
Intellectual developmental disorder with abnormal behavior, microcephaly, and short stature
β˜…β˜†β˜†β˜†2025β†’ Residue 333
NM_019042.5(PUS7):c.156_159del (p.Ile54fs)Pathogenic
Intellectual developmental disorder with abnormal behavior, microcephaly, and short stature
β˜…β˜†β˜†β˜†2025β†’ Residue 54
NM_019042.5(PUS7):c.1507del (p.Asp503fs)Pathogenic
Intellectual developmental disorder with abnormal behavior, microcephaly, and short stature
β˜…β˜†β˜†β˜†2025β†’ Residue 503
NM_019042.5(PUS7):c.1918C>T (p.Arg640Ter)Pathogenic
Intellectual developmental disorder with abnormal behavior, microcephaly, and short stature
β˜…β˜†β˜†β˜†2025β†’ Residue 640
NM_019042.5(PUS7):c.1270G>T (p.Glu424Ter)Pathogenic
Intellectual developmental disorder with abnormal behavior, microcephaly, and short stature
β˜…β˜†β˜†β˜†2025β†’ Residue 424
NM_019042.5(PUS7):c.424del (p.Glu141_Ile142insTer)Pathogenic
Intellectual developmental disorder with abnormal behavior, microcephaly, and short stature
β˜…β˜†β˜†β˜†2025β†’ Residue 141
NM_019042.5(PUS7):c.532C>T (p.Arg178Ter)Pathogenic
Intellectual developmental disorder with abnormal behavior, microcephaly, and short stature
β˜…β˜†β˜†β˜†2024β†’ Residue 178
NM_019042.5(PUS7):c.1121A>C (p.Tyr374Ser)Likely pathogenic
Intellectual developmental disorder with abnormal behavior, microcephaly, and short stature
β˜…β˜†β˜†β˜†2024β†’ Residue 374
NM_019042.5(PUS7):c.702C>A (p.Tyr234Ter)Likely pathogenic
Intellectual developmental disorder with abnormal behavior, microcephaly, and short stature
β˜…β˜†β˜†β˜†2023β†’ Residue 234
View on ClinVar β†—
Related Genes
MRPL13Protein interaction100%MRPL21Protein interaction100%MRPL47Protein interaction100%MRPL24Protein interaction100%MRPL11Protein interaction100%MALSU1Protein interaction99%
Tissue Expression6 tissues
Liver
100%
Brain
99%
Lung
80%
Heart
72%
Ovary
70%
Bone Marrow
70%
Gene Interaction Network
Click a node to explore
PUS7MRPL13MRPL21MRPL47MRPL24MRPL11MALSU1
PROTEIN STRUCTURE
Preparing viewer…
PDB5KKP Β· 2.26 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.73LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.54 [0.41–0.73]
RankingsWhere PUS7 stands among ~20K protein-coding genes
  • #7,806of 20,598
    Most Researched59
  • #1,730of 5,498
    Most Pathogenic Variants33
  • #5,645of 17,882
    Most Constrained (LOEUF)0.73
Genes detectedPUS7
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Targeting PUS7 suppresses tRNA pseudouridylation and glioblastoma tumorigenesis.
PMID: 35121864
Nat Cancer Β· 2021
1.00
2
Pseudouridylation of tRNA-Derived Fragments Steers Translational Control in Stem Cells.
PMID: 29628141
Cell Β· 2018
0.90
3
A hypoxia-responsive tRNA-derived small RNA confers renal protection through RNA autophagy.
PMID: 40674449
Science Β· 2025
0.80
4
Pseudouridine synthases modify human pre-mRNA co-transcriptionally and affect pre-mRNA processing.
PMID: 35051350
Mol Cell Β· 2022
0.70
5
Quantitative profiling of pseudouridylation landscape in the human transcriptome.
PMID: 36997645
Nat Chem Biol Β· 2023
0.60