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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
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RABGAP1
RAB GTPase activating protein 1
Chromosome 9 Β· 9q33.2-q33.3
NCBI Gene: 23637Ensembl: ENSG00000011454.19HGNC: HGNC:17155UniProt: B7Z2B4
65PubMed Papers
20Diseases
0Drugs
2Pathogenic Variants
FUNCTIONAL ROLE
Highly Constrained
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
regulation of cilium assemblyGTPase activator activityprotein bindingsmall GTPase bindingneurodegenerative diseasediabetes mellitusamyloidosislysosomal storage disease
✦AI Summary

RABGAP1 is a RAB GTPase-activating protein that regulates intracellular trafficking through modulation of RAB GTPase activity. Mechanistically, RABGAP1 controls endosomal positioning and vesicular trafficking by modulating Rab-regulated processes, with its GAP activity directly influencing compartment localization 1. A novel and clinically significant function emerged recently: RABGAP1 acts as a sensor for amyloid precursor protein (APP) trafficking by directly binding the YENPTY motif in APP's cytosolic tail, thereby regulating APP sorting and proteolytic processing 2. This trafficking function affects amyloid-Ξ² generation, implicating RABGAP1 in Alzheimer's disease pathogenesis. Biallelic loss-of-function RABGAP1 variants cause a novel neurodevelopmental syndrome characterized by global developmental delay, microcephaly, sensorineural hearing loss, seizures, and white matter abnormalities 3. Functionally, RABGAP1 loss impairs mTOR signaling and causes abnormal early endosome and lysosome localization. RABGAP1 shows pleiotropic associations with metabolic traits including type 2 diabetes and obesity 4, and genome-wide association studies link RABGAP1 variants to cortical structural phenotypes and birth weight 5. These findings position RABGAP1 as a critical regulator of vesicular trafficking with disease relevance spanning neurodegeneration, neurodevelopmental disorders, and metabolic disease.

Sources cited
1
RABGAP1 directly interacts with APP cytosolic tail YENPTY motif and regulates APP trafficking and processing through RAB activity modulation, with implications for Alzheimer's disease pathogenesis
PMID: 40859033
2
Biallelic loss-of-function RABGAP1 variants cause neurodevelopmental syndrome with developmental delay, microcephaly, hearing loss, seizures, and white matter abnormalities; patient cells show impaired mTOR signaling and abnormal endosome/lysosome localization
PMID: 36083289
3
RABGAP1 interacts with TUFT1 and modulates lysosomal positioning and vesicular trafficking to regulate mTORC1 signaling
PMID: 29423269
4
Genome-wide association studies identify RABGAP1 as sharing transcriptomic and genetic bases with both birth weight and cortical structural phenotypes
PMID: 40044659
5
RABGAP1 shows pleiotropic genetic associations with both type 2 diabetes and obesity
PMID: 32948839
Disease Associationsβ“˜20
neurodegenerative diseaseOpen Targets
0.53Moderate
diabetes mellitusOpen Targets
0.28Weak
amyloidosisOpen Targets
0.27Weak
lysosomal storage diseaseOpen Targets
0.25Weak
type 2 diabetes mellitusOpen Targets
0.25Weak
diabetic neuropathyOpen Targets
0.21Weak
osteoarthritis, kneeOpen Targets
0.20Weak
metabolic syndromeOpen Targets
0.20Weak
Abnormality of the skeletal systemOpen Targets
0.20Weak
kidney failureOpen Targets
0.19Weak
complex neurodevelopmental disorderOpen Targets
0.18Weak
cartilage diseaseOpen Targets
0.18Weak
osteoarthritis, hipOpen Targets
0.16Weak
type 2 diabetes nephropathyOpen Targets
0.13Weak
osteoarthritisOpen Targets
0.11Weak
insomniaOpen Targets
0.06Suggestive
mathematical abilityOpen Targets
0.04Suggestive
risk-taking behaviourOpen Targets
0.04Suggestive
polycystic kidney disease 5Open Targets
0.03Suggestive
retinitis pigmentosaOpen Targets
0.03Suggestive
Pathogenic Variants2
NM_012197.4(RABGAP1):c.2677C>T (p.Gln893Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 893
NM_012197.4(RABGAP1):c.2628+1G>ALikely pathogenic
Neurodevelopmental disorder, RABGAP1-related
β˜…β˜†β˜†β˜†2023
View on ClinVar β†—
Related Genes
TBC1D15Shared pathway100%TUFT1Protein interaction75%RAB6AProtein interaction72%RAB6BProtein interaction72%TBC1D10BShared pathway67%TBC1D3Shared pathway50%
Tissue Expression6 tissues
Heart
100%
Brain
94%
Ovary
64%
Lung
50%
Liver
28%
Bone Marrow
26%
Gene Interaction Network
Click a node to explore
RABGAP1TBC1D15TUFT1RAB6ARAB6BTBC1D10BTBC1D3
PROTEIN STRUCTURE
Preparing viewer…
PDB4NC6 Β· 1.80 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.24Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.16 [0.11–0.24]
RankingsWhere RABGAP1 stands among ~20K protein-coding genes
  • #7,200of 20,598
    Most Researched65
  • #4,394of 5,498
    Most Pathogenic Variants2
  • #710of 17,882
    Most Constrained (LOEUF)0.24 Β· top 5%
Genes detectedRABGAP1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
RABGAP1 is a sensor that facilitates the sorting and processing of amyloid precursor protein.
PMID: 40859033
EMBO J Β· 2025
1.00
2
Biallelic loss-of-function variants in RABGAP1 cause a novel neurodevelopmental syndrome.
PMID: 36083289
Genet Med Β· 2022
0.90
3
Association and shared biological bases between birth weight and cortical structure.
PMID: 40044659
Transl Psychiatry Β· 2025
0.80
4
Knockout mouse models as a resource for the study of rare diseases.
PMID: 37160609
Mamm Genome Β· 2023
0.70
5
Genetic Findings in Short Turkish Children Born to Consanguineous Parents.
PMID: 38838658
Horm Res Paediatr Β· 2025
0.60