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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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RAD9A
RAD9 checkpoint clamp component A
Chromosome 11 · 11q13.2
NCBI Gene: 5883Ensembl: ENSG00000172613.9HGNC: HGNC:9827UniProt: Q99638
146PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
DNA RepairHub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleusnucleoplasmnuclear bodySH3 domain bindingAbnormality of the skeletal systemneurodegenerative diseasesmoking initiationskin disease
✦AI Summary

RAD9A is a key component of the 9-1-1 checkpoint clamp complex (RAD9A-RAD1-HUS1) that plays critical roles in DNA damage response and repair 1. The protein possesses 3'-5' double-stranded DNA exonuclease activity and functions as a sliding clamp platform recruited to DNA lesions by the RAD17-RFC clamp loader complex 2. RAD9A exhibits cooperative DNA binding through multiple domains, with basic residues (K11, K15, R22, K78, K220, R223) being essential for DNA interaction 2. Mechanistically, RAD9A promotes ATR-CHK1 checkpoint activation by facilitating loading of checkpoint proteins onto chr11 and stabilizes stalled replication forks during replication stress 3. The protein also controls cellular localization of the Claspin adaptor protein, which is vital for Chk1-mediated checkpoint responses 4. Beyond DNA repair, RAD9A functions as a transcriptional regulator, binding p53 consensus sequences to control gene expression, including AGR2 in prostate cancer 5. Disease relevance includes roles in cancer progression, with hypermethylation of RAD9A intron 2 associated with genomic imbalances and tumorigenesis in childhood cancers and leukemia 6. RAD9A overexpression promotes metastatic phenotypes in prostate and colon cancers 57, making it a potential therapeutic target.

Sources cited
1
RAD9A is a component of the 9-1-1 checkpoint clamp complex crucial for MMEJ repair
PMID: 37440612
2
RAD9A has 3'-5' DNA exonuclease activity and cooperative DNA binding through basic residues
PMID: 35939452
3
ASPM promotes RAD9 loading onto chromatin for ATR-CHK1 activation during replication stress
PMID: 36161901
4
RAD9A controls nuclear localization of Claspin adaptor protein for checkpoint activation
PMID: 20081369
5
RAD9A transcriptionally regulates AGR2 and promotes metastatic phenotypes in prostate cancer
PMID: 30295739
6
Hypermethylation of RAD9A intron 2 is associated with genomic imbalances in childhood cancers
PMID: 35221838
7
RAD9A promotes proliferation and metastasis in colon cancer through AKT activation
PMID: 39116498
Disease Associationsⓘ20
Abnormality of the skeletal systemOpen Targets
0.25Weak
neurodegenerative diseaseOpen Targets
0.23Weak
smoking initiationOpen Targets
0.17Weak
skin diseaseOpen Targets
0.12Weak
osteoarthritis, hipOpen Targets
0.11Weak
breast cancerOpen Targets
0.09Suggestive
hair colorOpen Targets
0.08Suggestive
osteoarthritis, kneeOpen Targets
0.08Suggestive
neoplasmOpen Targets
0.07Suggestive
thyroid cancerOpen Targets
0.07Suggestive
total hip arthroplastyOpen Targets
0.07Suggestive
cancerOpen Targets
0.06Suggestive
hemolytic anemiaOpen Targets
0.06Suggestive
lung cancerOpen Targets
0.06Suggestive
leukemiaOpen Targets
0.04Suggestive
osteoarthritisOpen Targets
0.04Suggestive
prostate cancerOpen Targets
0.03Suggestive
childhood cancerOpen Targets
0.03Suggestive
dislocationOpen Targets
0.03Suggestive
posterior cortical atrophyOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CHEK1Protein interaction100%RFC5Protein interaction100%RFC4Protein interaction100%RFC3Protein interaction100%ATAD5Protein interaction100%TP53Protein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Liver
91%
Lung
66%
Ovary
65%
Heart
25%
Brain
18%
Gene Interaction Network
Click a node to explore
RAD9ACHEK1RFC5RFC4RFC3ATAD5TP53
PROTEIN STRUCTURE
Preparing viewer…
PDB8JZY · 1.50 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.87LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.62 [0.45–0.87]
RankingsWhere RAD9A stands among ~20K protein-coding genes
  • #3,117of 20,598
    Most Researched146 · top quartile
  • #7,608of 17,882
    Most Constrained (LOEUF)0.87
Genes detectedRAD9A
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
RHINO directs MMEJ to repair DNA breaks in mitosis.
PMID: 37440612
Science · 2023
1.00
2
ASPM promotes ATR-CHK1 activation and stabilizes stalled replication forks in response to replication stress.
PMID: 36161901
Proc Natl Acad Sci U S A · 2022
0.90
3
DNA binding by the Rad9A subunit of the Rad9-Rad1-Hus1 complex.
PMID: 35939452
PLoS One · 2022
0.80
4
Unveiling an anoikis-related risk model and the role of RAD9A in colon cancer.
PMID: 39116498
Int Immunopharmacol · 2024
0.70
5
The Rad9A checkpoint protein is required for nuclear localization of the claspin adaptor protein.
PMID: 20081369
Cell Cycle · 2010
0.60