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GeneE
50 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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RAF1
Raf-1 proto-oncogene, serine/threonine kinase
Chromosome 3 Β· 3p25.2
NCBI Gene: 5894Ensembl: ENSG00000132155.14HGNC: HGNC:9829UniProt: A0A0S2Z4L5
709PubMed Papers
23Diseases
9Drugs
53Pathogenic Variants
FUNCTIONAL ROLE
Hub GeneKinaseOncogene
RESEARCH IMPACT
Highly StudiedTrendingVariant-Rich
CLINICAL
FDA Approved TargetOMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
small GTPase bindingplasma membraneprotein kinase activityprotein serine/threonine kinase activityNoonan syndromeNoonan syndrome 5dilated cardiomyopathyLEOPARD syndrome 2
✦AI Summary

RAF1 is a serine/threonine kinase that serves as a critical regulatory link between membrane-associated RAS GTPases and the MAPK/ERK signaling cascade, functioning as a molecular switch that determines cell fate decisions including proliferation, differentiation, and survival 1. The protein operates through sequential phosphorylation of downstream kinases MEK1/MEK2 and ERK1/ERK2, with its activity regulated by AMPK-mediated phosphorylation at specific residues like Ser621, which enhances binding to 14-3-3 scaffolding proteins 2. RAF1 also forms complexes with PPP1CB phosphatase and LZTR1, which regulate its phosphorylation state and activity 3. Disease relevance is significant, as RAF1 mutations cause RASopathies including Noonan syndrome, characterized by cardiac defects (particularly hypertrophic cardiomyopathy), short stature, and developmental delays 45. Clinically, RAF1-dependent signaling represents a therapeutic target, with MEK inhibition showing 89% response rates in histiocytic neoplasms regardless of genotype 6. RAF1 is also implicated in viral replication, pulmonary fibrosis through Dectin-1 signaling 7, and cancer metastasis via tumor-derived exosomes 8, highlighting its broad pathological significance beyond developmental disorders.

Sources cited
1
RAF1 functions as a regulatory link between RAS GTPases and MAPK signaling in disease contexts
PMID: 28666118
2
RAF1 activity is regulated by AMPK-mediated phosphorylation at Ser621 and 14-3-3 binding
PMID: 37546879
3
LZTR1 binds to RAF1-PPP1CB complexes and regulates RAF1 phosphorylation
PMID: 30368668
4
RAF1 mutations cause Noonan syndrome with cardiac defects and developmental features
PMID: 40332000
5
RAF1 variants are associated with RASopathy phenotypes including hypertrophic cardiomyopathy
PMID: 39725732
6
MEK inhibition shows high response rates in histiocytic neoplasms with RAF1 mutations
PMID: 30867592
7
RAF1 signaling promotes pulmonary fibrosis through Dectin-1 pathway
PMID: 40494347
8
RAF1 expression is increased in tumor-derived exosomes in colorectal cancer
PMID: 40235336
Disease Associationsβ“˜23
Noonan syndromeOpen Targets
0.86Strong
Noonan syndrome 5Open Targets
0.76Strong
dilated cardiomyopathyOpen Targets
0.75Strong
LEOPARD syndrome 2Open Targets
0.71Strong
rasopathyOpen Targets
0.68Moderate
hepatocellular carcinomaOpen Targets
0.67Moderate
Noonan syndrome with multiple lentiginesOpen Targets
0.67Moderate
cancerOpen Targets
0.63Moderate
renal cell carcinomaOpen Targets
0.58Moderate
hypertrophic cardiomyopathyOpen Targets
0.57Moderate
Costello syndromeOpen Targets
0.56Moderate
neoplasmOpen Targets
0.55Moderate
metastatic colorectal cancerOpen Targets
0.55Moderate
colorectal cancerOpen Targets
0.55Moderate
Abnormality of the cardiovascular systemOpen Targets
0.53Moderate
Noonan syndrome and Noonan-related syndromeOpen Targets
0.51Moderate
low grade gliomaOpen Targets
0.50Moderate
colorectal neoplasmOpen Targets
0.49Moderate
familial hypertrophic cardiomyopathyOpen Targets
0.46Moderate
thyroid carcinomaOpen Targets
0.46Moderate
Cardiomyopathy, dilated, 1NNUniProt
LEOPARD syndrome 2UniProt
Noonan syndrome 5UniProt
Pathogenic Variants53
NM_002880.4(RAF1):c.1472C>T (p.Thr491Ile)Pathogenic
Noonan syndrome with multiple lentigines|Noonan syndrome|not provided|RASopathy|Cardiovascular phenotype|Noonan syndrome 5
β˜…β˜…β˜…β˜†2024β†’ Residue 491
NM_002880.4(RAF1):c.775T>A (p.Ser259Thr)Pathogenic
Noonan syndrome|not provided|RASopathy|Noonan syndrome 1|Monogenic short statue
β˜…β˜…β˜…β˜†2024β†’ Residue 259
NM_002880.4(RAF1):c.768G>T (p.Arg256Ser)Likely pathogenic
Noonan syndrome|not provided|RASopathy|Cardiovascular phenotype|Noonan syndrome 5
β˜…β˜…β˜…β˜†2024β†’ Residue 256
NM_002880.4(RAF1):c.1837C>G (p.Leu613Val)Pathogenic
Noonan syndrome 5|LEOPARD syndrome 2|Noonan syndrome with multiple lentigines|RASopathy|not provided|Noonan syndrome;Noonan syndrome with multiple lentigines|Hypertrophic cardiomyopathy 1|RAF1-related disorder
β˜…β˜…β˜…β˜†2024β†’ Residue 613
NM_002880.4(RAF1):c.775T>G (p.Ser259Ala)Pathogenic
not specified|not provided|RASopathy|Noonan syndrome 5
β˜…β˜…β˜…β˜†2020β†’ Residue 259
NM_002880.4(RAF1):c.776C>A (p.Ser259Tyr)Pathogenic
not specified|LEOPARD syndrome 2|RASopathy|Noonan syndrome|not provided|Noonan syndrome 5
β˜…β˜…β˜…β˜†2020β†’ Residue 259
NM_002880.4(RAF1):c.788T>G (p.Val263Gly)Likely pathogenic
Noonan syndrome|not provided|RASopathy|Noonan syndrome 1
β˜…β˜…β˜…β˜†2017β†’ Residue 263
NM_002880.4(RAF1):c.769T>C (p.Ser257Pro)Likely pathogenic
Noonan syndrome|not provided|Primary familial hypertrophic cardiomyopathy|RASopathy
β˜…β˜…β˜…β˜†2017β†’ Residue 257
NM_002880.4(RAF1):c.781C>T (p.Pro261Ser)Pathogenic
Noonan syndrome 5|not provided|Primary familial hypertrophic cardiomyopathy|Noonan syndrome|RASopathy|Cardiovascular phenotype|Inborn genetic diseases|Noonan syndrome and Noonan-related syndrome|Noonan syndrome 1
β˜…β˜…β˜…β˜†2017β†’ Residue 261
NM_002880.4(RAF1):c.770C>T (p.Ser257Leu)Pathogenic
Noonan syndrome 5|LEOPARD syndrome 2|Noonan syndrome with multiple lentigines|RASopathy|Noonan syndrome|not provided|Noonan syndrome 5;LEOPARD syndrome 2;Dilated cardiomyopathy 1NN|Noonan syndrome;Noonan syndrome with multiple lentigines|Noonan syndrome 1|RAF1-related disorder|Noonan syndrome and Noonan-related syndrome|Cardiovascular phenotype|See cases|Embryonal rhabdomyosarcoma
β˜…β˜…β˜…β˜†2017β†’ Residue 257
NM_002880.4(RAF1):c.1082G>C (p.Gly361Ala)Pathogenic
Noonan syndrome|not provided|RASopathy|LEOPARD syndrome 2|Noonan syndrome 5
β˜…β˜…β˜…β˜†2017β†’ Residue 361
NM_002880.4(RAF1):c.1457A>G (p.Asp486Gly)Pathogenic
Noonan syndrome|not provided|RASopathy|RAF1-related disorder|Noonan syndrome 5
β˜…β˜…β˜†β˜†2025β†’ Residue 486
NM_002880.4(RAF1):c.782C>T (p.Pro261Leu)Pathogenic
Noonan syndrome 5|Noonan syndrome|not provided|RASopathy|Dilated cardiomyopathy 1NN|Cardiovascular phenotype
β˜…β˜…β˜†β˜†2025β†’ Residue 261
NM_002880.4(RAF1):c.788T>C (p.Val263Ala)Pathogenic
not provided|RASopathy|Noonan syndrome 5|Cardiovascular phenotype
β˜…β˜…β˜†β˜†2025β†’ Residue 263
NM_002880.4(RAF1):c.786T>G (p.Asn262Lys)Pathogenic
RASopathy|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 262
NM_002880.4(RAF1):c.781C>G (p.Pro261Ala)Pathogenic
Primary familial hypertrophic cardiomyopathy|Noonan syndrome|not provided|LEOPARD syndrome 2;Noonan syndrome 5;Dilated cardiomyopathy 1NN|RASopathy|RAF1-related disorder|Noonan syndrome 5
β˜…β˜…β˜†β˜†2025β†’ Residue 261
NM_002880.4(RAF1):c.784A>G (p.Asn262Asp)Likely pathogenic
Cardiovascular phenotype|RASopathy
β˜…β˜…β˜†β˜†2025β†’ Residue 262
NM_002880.4(RAF1):c.781C>A (p.Pro261Thr)Pathogenic
Noonan syndrome|RASopathy|Noonan syndrome and Noonan-related syndrome|Noonan syndrome 1
β˜…β˜…β˜†β˜†2025β†’ Residue 261
NM_002880.4(RAF1):c.775T>C (p.Ser259Pro)Pathogenic
Noonan syndrome|RASopathy|Noonan syndrome 5
β˜…β˜…β˜†β˜†2025β†’ Residue 259
NM_002880.4(RAF1):c.779C>A (p.Thr260Lys)Pathogenic
RASopathy|Noonan syndrome 5
β˜…β˜…β˜†β˜†2025β†’ Residue 260
View on ClinVar β†—
Drug Targets9
ARQ-736Phase I
Serine/threonine-protein kinase RAF inhibitor
BELVARAFENIBPhase II
RAF serine/threonine protein kinase inhibitor
neoplasm
LY-3009120Phase I
Serine/threonine-protein kinase A-Raf inhibitor
NAPORAFENIBPhase III
B-raf/RAF proto-oncogene serine/threonine-protein kinase inhibitor
melanoma
REGORAFENIBApproved
Discoidin domain-containing receptor 2 inhibitor
colorectal cancer
SORAFENIBApproved
Serine/threonine-protein kinase RAF inhibitor
renal cell carcinoma
SORAFENIB TOSYLATEApproved
Serine/threonine-protein kinase RAF inhibitor
renal cell carcinoma
TOVORAFENIBApproved
RAF serine/threonine protein kinase inhibitor
low grade glioma
XL-281Phase I/II
Serine/threonine-protein kinase B-raf inhibitor
colorectal cancer
Related Genes
PEBP1Protein interaction100%PIK3R1Protein interaction100%PIK3CDProtein interaction100%PAK5Protein interaction100%YWHAHProtein interaction100%PAK1Protein interaction100%
Tissue Expression6 tissues
Heart
100%
Lung
77%
Liver
69%
Ovary
66%
Bone Marrow
64%
Brain
29%
Gene Interaction Network
Click a node to explore
RAF1PEBP1PIK3R1PIK3CDPAK5YWHAHPAK1
PROTEIN STRUCTURE
Preparing viewer…
PDB3IQU Β· 1.05 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.35Moderately Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.24 [0.17–0.35]
RankingsWhere RAF1 stands among ~20K protein-coding genes
  • #302of 20,598
    Most Researched709 Β· top 5%
  • #357of 1,025
    FDA-Approved Drug Targets4
  • #1,271of 5,498
    Most Pathogenic Variants53 Β· top quartile
  • #1,561of 17,882
    Most Constrained (LOEUF)0.35 Β· top 10%
Genes detectedRAF1
Sources retrieved50 papers
Response timeβ€”
πŸ“„ Sources
50β–Ό
1
RAS Proteins and Their Regulators in Human Disease.
PMID: 28666118
Cell Β· 2017
1.00
2
Dectin-1 facilitates lung fungal-mediated pulmonary fibrosis.
PMID: 40494347
Immunity Β· 2025
0.90
3
RAF1 kinase contributes to autophagic lysosome reformation.
PMID: 40184255
Cell Rep Β· 2025
0.82
4
Efficacy of MEK inhibition in patients with histiocytic neoplasms.
PMID: 30867592
Nature Β· 2019
0.80
5
Mitochondrial Raf1 Regulates Glutamine Catabolism.
PMID: 38496616
bioRxiv Β· 2024
0.78