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8 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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RBM46
RNA binding motif protein 46
Chromosome 4 · 4q32.1
NCBI Gene: 166863Ensembl: ENSG00000151962.8HGNC: HGNC:28401UniProt: Q8TBY0
15PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingnucleuscytoplasmmRNA bindingspinal cord injuryParalysisazoospermiaceliac disease
✦AI Summary

RBM46 (RNA binding motif protein 46) is an essential RNA-binding protein that regulates the mitotic-to-meiotic transition during spermatogenesis 1. RBM46 functions as a critical component of the YTHDC2/MEIOC complex, where it recognizes and binds to specific GCCUAU/GUUCGA motifs within the 3' UTRs of mitotic transcripts positioned near YTHDC2 U-rich binding sites 1. This binding targets mitotic mRNAs—including transcriptional repressors E2f6 and Mga—for degradation, thereby derepressing meiosis-associated genes and conferring molecular competence for meiotic initiation in response to retinoic acid signaling 2. RBM46 is also required for spermatogonial differentiation and normal synaptonemal complex formation by positively regulating translation of meiotic cohesin subunit mRNAs 1. Testis-specific Rbm46 knockout in mice causes infertility with defective meiotic entry, phenocopying Ythdc2 or Meioc knockouts 1. Dysregulated RBM46 expression is associated with human male fertility disorders 1. Beyond reproduction, RBM46 functions as a novel cofactor for APOBEC1-mediated C-to-U RNA editing, facilitating post-transcriptional modifications involved in diverse cellular processes 3. Environmental toxins such as short-chain chlorinated paraffins impair spermatogenesis partly through suppressing Rbm46 expression via epigenetic mechanisms 4.

Sources cited
1
RBM46 is a core component of YTHDC2/MEIOC complex that binds mitotic transcript 3'UTRs and targets them for degradation during meiotic entry; testis-specific knockout causes infertility with defective mitotic-to-meiotic transition
PMID: 36001654
2
RBM46 works with MEIOC and YTHDC2 to destabilize mitotic gene mRNAs (E2f6, Mga) before meiotic initiation, derepressing meiosis-associated genes and conferring competence for meiotic entry
PMID: 38884383
3
RBM46 functions as a novel cofactor for APOBEC1 to facilitate C-to-U RNA editing on ApoB mRNA and other cellular RNA targets
PMID: 38708190
4
Rbm46 expression is suppressed by short-chain chlorinated paraffins through epigenetic mechanisms, contributing to impaired spermatogenesis
PMID: 39295530
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
ParalysisOpen Targets
0.09Suggestive
spinal cord injuryOpen Targets
0.09Suggestive
azoospermiaOpen Targets
0.09Suggestive
celiac diseaseOpen Targets
0.08Suggestive
partial chromosome Y deletionOpen Targets
0.07Suggestive
spermatogenic failure 57Open Targets
0.06Suggestive
spermatogenic failure 50Open Targets
0.06Suggestive
spermatogenic failure, X-linked, 2Open Targets
0.06Suggestive
spermatogenic failure 25Open Targets
0.06Suggestive
spinocerebellar ataxia type 32Open Targets
0.06Suggestive
isochromosomy YpOpen Targets
0.06Suggestive
spermatogenic failure 71Open Targets
0.06Suggestive
spermatogenic failure 59Open Targets
0.06Suggestive
spermatogenic failure 60Open Targets
0.06Suggestive
spermatogenic failure 73Open Targets
0.06Suggestive
spermatogenic failure 74Open Targets
0.06Suggestive
spermatogenic failure 61Open Targets
0.05Suggestive
spermatogenic failure 62Open Targets
0.05Suggestive
spermatogenic failure 88Open Targets
0.05Suggestive
46,XX testicular disorder of sex developmentOpen Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
HSF5Shared pathway33%REC114Shared pathway29%ASZ1Shared pathway29%MARF1Shared pathway29%MEIOSINShared pathway25%STRA8Shared pathway25%
Tissue Expression6 tissues
Liver
100%
Brain
15%
Bone Marrow
10%
Lung
0%
Ovary
0%
Heart
0%
Gene Interaction Network
Click a node to explore
RBM46HSF5REC114ASZ1MARF1MEIOSINSTRA8
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q8TBY0
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.49Moderately Constrained
pLIⓘ
0.99Intolerant
Observed/Expected LoF0.30 [0.19–0.49]
RankingsWhere RBM46 stands among ~20K protein-coding genes
  • #15,674of 20,598
    Most Researched15
  • #2,911of 17,882
    Most Constrained (LOEUF)0.49 · top quartile
Genes detectedRBM46
Sources retrieved8 papers
Response time—
📄 Sources
8▼
1
Short Chain Chlorinated Paraffins Impaired Spermatogenesis Process in Mice via Inhibiting α-KG/TET Enzyme Activity.
PMID: 39295530
Environ Sci Technol · 2024
1.00
2
Destabilization of mRNAs enhances competence to initiate meiosis in mouse spermatogenic cells.
PMID: 38884383
Development · 2024
0.88
3
RNA binding protein RBM46 regulates mitotic-to-meiotic transition in spermatogenesis.
PMID: 36001654
Sci Adv · 2022
0.75
4
RNA-Binding Motif Protein RBM47 Promotes Invasiveness of Glioblastoma Through Activation of Epithelial-to-Mesenchymal Transition Program.
PMID: 38156907
Genet Test Mol Biomarkers · 2023
0.63
5
Expression analysis of a panel of cancer-testis antigens in bladder cancer.
PMID: 30362892
Per Med · 2018
0.50