HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
RNF169
ring finger protein 169
Chromosome 11 · 11q13.4
NCBI Gene: 254225Ensembl: ENSG00000166439.7HGNC: HGNC:26961UniProt: Q8NCN4
60PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
DNA RepairHomologous Recombination
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingnucleoluscytosolnuclear bodyhemorrhagegastric ulceralcohol drinkingdisease of peritoneum
✦AI Summary

RNF169 is a non-canonical E3 ubiquitin-protein ligase that regulates DNA double-strand break (DSB) repair pathway choice 1. Rather than catalyzing ubiquitylation itself, RNF169 functions as a ubiquitin reader that recognizes RNF168-mediated ubiquitin modifications on DSB-containing chr11 1. Upon recruitment to DSB sites, RNF169 competitively displaces 53BP1 and RAP80-BRCA1 from RNF168-modified chr11 independent of its E3 ligase activity, thereby promoting homologous recombination repair (HRR) and single-strand annealing while restraining non-homologous end joining (NHEJ) 12. RNF169 exhibits preferential accumulation at resected DNA ends and promotes CtIP-dependent DSB end resection 2. Beyond DSB repair, RNF169 functions as a reader of H2BK120ub at replication forks, protecting nascent DNA from nucleolytic degradation during replication stress 3. RNF169 protein stability is maintained through a dual-function nuclear localization signal that mediates direct interaction with deubiquitylase USP7 4. Dysregulation of RNF169 has clinical implications, as altered expression correlates with breast cancer outcomes 4, and RNF169 is targeted for epigenetic silencing by phytoestrogen-induced pathways in mammary epithelial cells 5.

Sources cited
1
RNF169 functions as a negative regulator of ubiquitin-dependent DSB response, competitively limiting 53BP1 and RAP80 recruitment to promote HRR over NHEJ independent of its E3 ligase catalytic activity
PMID: 22492721
2
RNF169 exhibits preferential accumulation at resected DSB sites, promotes CtIP-dependent end resection, and dose-dependently stimulates single-strand annealing repair by alleviating 53BP1-imposed barriers
PMID: 30104380
3
RNF169 is a reader of H2BK120ub histone modification at replication forks where it protects nascent DNA from excessive nucleolytic degradation during replication stress
PMID: 41145912
4
RNF169 harbors a dual-function nuclear localization signal that mediates USP7 interaction for protein stability; USP7 and RNF169 expression correlate positively in breast cancer specimens
PMID: 28325877
5
RNF169 is identified as a target for epigenetic silencing via SIRT1/DNMT3B-mediated promoter hypermethylation in response to phytoestrogen genistein in mammary epithelial cells
PMID: 40029260
6
DYRK1A phosphorylates RNF169 to enhance its ability to displace 53BP1 from DSB sites and promote homologous recombination
PMID: 30773093
7
RNF169 antagonizes ubiquitin signaling at DSBs by interacting with ubiquitin structures and compromising 53BP1 accumulation
PMID: 22733822
Disease Associationsⓘ20
hemorrhageOpen Targets
0.28Weak
gastric ulcerOpen Targets
0.27Weak
alcohol drinkingOpen Targets
0.23Weak
disease of peritoneumOpen Targets
0.22Weak
type 2 diabetes mellitusOpen Targets
0.13Weak
colonic neoplasmOpen Targets
0.09Suggestive
anal neoplasmOpen Targets
0.08Suggestive
rectal neoplasmOpen Targets
0.08Suggestive
pancreatic adenocarcinomaOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.04Suggestive
polyp of colonOpen Targets
0.04Suggestive
benign colon neoplasmOpen Targets
0.03Suggestive
ghosal hematodiaphyseal dysplasiaOpen Targets
0.03Suggestive
cancerOpen Targets
0.03Suggestive
pernicious anemiaOpen Targets
0.02Suggestive
gastric adenocarcinomaOpen Targets
0.01Suggestive
acute myeloid leukemiaOpen Targets
0.01Suggestive
cholangiocarcinomaOpen Targets
0.01Suggestive
squamous cell carcinomaOpen Targets
0.01Suggestive
breast cancerOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
UBCProtein interaction100%DYRK1AProtein interaction93%TP53BP1Protein interaction93%BRCA1Protein interaction90%DYRK1BProtein interaction82%DCAF7Protein interaction80%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
52%
Lung
47%
Heart
36%
Ovary
33%
Liver
17%
Gene Interaction Network
Click a node to explore
RNF169UBCDYRK1ATP53BP1BRCA1DYRK1BDCAF7
PROTEIN STRUCTURE
Preparing viewer…
PDB5GG4 · 3.11 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.78LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.55 [0.40–0.78]
RankingsWhere RNF169 stands among ~20K protein-coding genes
  • #7,706of 20,598
    Most Researched60
  • #6,344of 17,882
    Most Constrained (LOEUF)0.78
Genes detectedRNF169
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
H2BK120ub and its reader RNF169 sequentially regulate replication fork remodeling and stability.
PMID: 41145912
EMBO J · 2025
1.00
2
SIRT1/DNMT3B-mediated epigenetic gene silencing in response to phytoestrogens in mammary epithelial cells.
PMID: 40029260
Epigenetics · 2025
0.90
3
Dual-utility NLS drives RNF169-dependent DNA damage responses.
PMID: 28325877
Proc Natl Acad Sci U S A · 2017
0.80
4
Human RNF169 is a negative regulator of the ubiquitin-dependent response to DNA double-strand breaks.
PMID: 22492721
J Cell Biol · 2012
0.70
5
DYRK1A regulates the recruitment of 53BP1 to the sites of DNA damage in part through interaction with RNF169.
PMID: 30773093
Cell Cycle · 2019
0.60