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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
RNF43
ring finger protein 43
Chromosome 17 Β· 17q22
NCBI Gene: 54894Ensembl: ENSG00000108375.13HGNC: HGNC:18505UniProt: J3KSE3
92PubMed Papers
21Diseases
0Drugs
33Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
ubiquitin-protein transferase activityfrizzled bindingprotein bindingubiquitin-dependent protein catabolic processsessile serrated polyposis cancer syndromepancreatic adenocarcinomaprostate carcinomagastric adenocarcinoma
✦AI Summary

RNF43 is an E3 ubiquitin ligase that functions as a critical negative regulator of Wnt signaling by mediating ubiquitination and degradation of Frizzled receptors, affecting both canonical and non-canonical Wnt pathways 1. Beyond Wnt regulation, RNF43 also modulates other tumor-related proteins including EGFR, BRAF, and BMP signaling 1. RNF43 mutations are frequently detected across gastrointestinal malignancies. In colorectal cancer, RNF43 mutations increase oncogenic Wnt pathway alterations and are enriched in right-sided microsatellite-stable tumors with worse prognosis 2. In pancreatic ductal adenocarcinoma, RNF43 is among the most recurrent somatic mutations identified 3. Gastric adenocarcinoma subtypes with RNF43 expression show activated Wnt/Ξ²-catenin signaling 4. A colorectal organoid with RNF43 mutation demonstrated exquisite sensitivity to Wnt secretion inhibitors, supporting therapeutic targeting 5. Clinically, RNF43 germline mutations predispose to colorectal cancer and sessile serrated polyposis cancer syndrome 6. In inflammatory bowel disease-associated colorectal cancer, RNF43 downregulation contributes to distinct mesenchymal tumor subtype development and altered prognosis compared to sporadic colorectal cancer 7.

Sources cited
1
RNF43 regulates Wnt/Ξ²-catenin signaling and other tumor-related proteins including EGFR, BRAF, and BMP pathway
PMID: 39551397
2
RNF43 mutations enriched in right-sided microsatellite-stable colorectal cancers associated with worse survival
PMID: 29316426
3
RNF43 is a recurrent somatic mutation in pancreatic ductal adenocarcinoma
PMID: 28810144
4
RNF43 expression in gastric adenocarcinoma subtype with activated Wnt/Ξ²-catenin signaling
PMID: 32532891
5
Colorectal organoid with RNF43 mutation sensitive to Wnt porcupine inhibitors
PMID: 25957691
6
RNF43 germline mutations predispose to colorectal cancer and sessile serrated polyposis cancer syndrome
PMID: 36768460
7
RNF43 downregulation in inflammatory bowel disease-associated colorectal cancer contributes to mesenchymal tumor subtype
PMID: 33930428
Disease Associationsβ“˜21
sessile serrated polyposis cancer syndromeOpen Targets
0.67Moderate
pancreatic adenocarcinomaOpen Targets
0.52Moderate
prostate carcinomaOpen Targets
0.52Moderate
gastric adenocarcinomaOpen Targets
0.47Moderate
colorectal adenocarcinomaOpen Targets
0.46Moderate
pancreatic carcinomaOpen Targets
0.44Moderate
hyperplastic polyposis syndromeOpen Targets
0.42Moderate
hypertensionOpen Targets
0.41Moderate
colon adenocarcinomaOpen Targets
0.40Moderate
gastric carcinomaOpen Targets
0.39Weak
lung carcinomaOpen Targets
0.37Weak
ovarian mucinous adenocarcinomaOpen Targets
0.37Weak
pancreatic ductal adenocarcinomaOpen Targets
0.37Weak
Iron deficiency anemiaOpen Targets
0.37Weak
Malignant Pancreatic NeoplasmOpen Targets
0.37Weak
pancreatic neoplasmOpen Targets
0.37Weak
colon adenomaOpen Targets
0.37Weak
cecum adenocarcinomaOpen Targets
0.37Weak
rectum adenomaOpen Targets
0.37Weak
skin basal cell carcinomaOpen Targets
0.37Weak
Sessile serrated polyposis cancer syndromeUniProt
Pathogenic Variants33
NM_017763.6(RNF43):c.582+1G>ALikely pathogenic
Sessile serrated polyposis cancer syndrome
β˜…β˜†β˜†β˜†2025
NM_017763.6(RNF43):c.1650C>A (p.Tyr550Ter)Pathogenic
Sessile serrated polyposis cancer syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 550
NM_017763.6(RNF43):c.1840C>T (p.Gln614Ter)Pathogenic
Sessile serrated polyposis cancer syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 614
NM_017763.6(RNF43):c.1016_1017del (p.Leu339fs)Pathogenic
Sessile serrated polyposis cancer syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 339
NM_017763.6(RNF43):c.1403C>G (p.Ser468Ter)Pathogenic
Sessile serrated polyposis cancer syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 468
NM_017763.6(RNF43):c.1433_1434del (p.Ser478fs)Pathogenic
Sessile serrated polyposis cancer syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 478
NM_017763.6(RNF43):c.2308+1G>ALikely pathogenic
Sessile serrated polyposis cancer syndrome
β˜…β˜†β˜†β˜†2025
NM_017763.6(RNF43):c.913C>T (p.Gln305Ter)Pathogenic
Sessile serrated polyposis cancer syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 305
NM_017763.6(RNF43):c.1308_1449del (p.Arg437fs)Pathogenic
Sessile serrated polyposis cancer syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 437
NM_017763.6(RNF43):c.724C>T (p.Gln242Ter)Pathogenic
Sessile serrated polyposis cancer syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 242
NM_017763.6(RNF43):c.1434_1435insTCCAGTGTCT (p.Val479fs)Pathogenic
Sessile serrated polyposis cancer syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 479
NM_017763.6(RNF43):c.997C>T (p.Gln333Ter)Pathogenic
Sessile serrated polyposis cancer syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 333
NM_017763.6(RNF43):c.1252_1255dup (p.Ser419fs)Pathogenic
Sessile serrated polyposis cancer syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 419
NM_017763.6(RNF43):c.1207_1210dup (p.Arg404fs)Pathogenic
Sessile serrated polyposis cancer syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 404
NM_017763.6(RNF43):c.1617dup (p.Gly540fs)Pathogenic
Sessile serrated polyposis cancer syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 540
NM_017763.6(RNF43):c.1691G>A (p.Trp564Ter)Pathogenic
Sessile serrated polyposis cancer syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 564
NM_017763.6(RNF43):c.1383del (p.Pro462fs)Pathogenic
Sessile serrated polyposis cancer syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 462
NM_017763.6(RNF43):c.697C>T (p.Gln233Ter)Pathogenic
Sessile serrated polyposis cancer syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 233
NM_017763.6(RNF43):c.582+1G>CLikely pathogenic
Sessile serrated polyposis cancer syndrome
β˜…β˜†β˜†β˜†2025
NM_017763.6(RNF43):c.1794_1798del (p.Thr599fs)Pathogenic
Sessile serrated polyposis cancer syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 599
View on ClinVar β†—
Related Genes
AXIN1Protein interaction100%RSPO2Protein interaction100%LGR4Protein interaction100%LRP6Protein interaction99%DVL1Protein interaction99%RSPO3Protein interaction99%
Tissue Expression6 tissues
Liver
100%
Bone Marrow
25%
Heart
21%
Lung
19%
Ovary
8%
Brain
7%
Gene Interaction Network
Click a node to explore
RNF43AXIN1RSPO2LGR4LRP6DVL1RSPO3
PROTEIN STRUCTURE
Preparing viewer…
PDB4KNG Β· 2.50 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.63LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.48 [0.37–0.63]
RankingsWhere RNF43 stands among ~20K protein-coding genes
  • #5,214of 20,598
    Most Researched92
  • #1,725of 5,498
    Most Pathogenic Variants33
  • #4,477of 17,882
    Most Constrained (LOEUF)0.63
Genes detectedRNF43
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Prospective derivation of a living organoid biobank of colorectal cancer patients.
PMID: 25957691
Cell Β· 2015
1.00
2
Integrated Genomic Characterization of Pancreatic Ductal Adenocarcinoma.
PMID: 28810144
Cancer Cell Β· 2017
0.90
3
Dissecting transcriptional heterogeneity in primary gastric adenocarcinoma by single cell RNA sequencing.
PMID: 32532891
Gut Β· 2021
0.80
4
Clinical Sequencing Defines the Genomic Landscape of Metastatic Colorectal Cancer.
PMID: 29316426
Cancer Cell Β· 2018
0.70
5
Genetic Predisposition to Colorectal Cancer: How Many and Which Genes to Test?
PMID: 36768460
Int J Mol Sci Β· 2023
0.60