HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
RPGRIP1
RPGR interacting protein 1
Chromosome 14 Β· 14q11.2
NCBI Gene: 57096Ensembl: ENSG00000092200.13HGNC: HGNC:13436UniProt: Q96KN7
57PubMed Papers
22Diseases
0Drugs
178Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingciliumciliary tipphotoreceptor connecting ciliumLeber congenital amaurosiscone-rod dystrophy 13Leber congenital amaurosis 6Cone rod dystrophy
✦AI Summary

RPGRIP1 encodes a scaffolding protein essential for photoreceptor ciliary function and survival. Primary function: RPGRIP1 localizes to the photoreceptor connecting cilium, where it anchors and enables correct positioning of the RPGR protein 1. This interaction is critical for maintaining the structural integrity of the ciliary axoneme 1. Mechanism: RPGRIP1 contains a C-terminal RPGR-interacting domain and coiled-coil domain 1, and is required for normal disk morphogenesis and outer segment organization in photoreceptors 1. Multiple RPGRIP1 isoforms exist with distinct subcellular localizations and functions, suggesting both ciliary and lysosome-related roles 2. Disease relevance: Recessive RPGRIP1 mutations cause Leber congenital amaurosis 6 (LCA6), accounting for 5-6% of LCA cases 3, and cone-rod dystrophy. RPGRIP1 is among the five most frequently mutated genes in LCA cohorts 4. Photoreceptors lacking functional RPGRIP1 cannot maintain light-sensing outer segments, causing early retinal function loss 3. Clinical significance: Patients typically retain central retinal photoreceptors into adulthood 3, enabling potential therapeutic intervention. Gene augmentation therapy in murine models effectively slows photoreceptor degeneration 5 and rescues disease phenotypes in human iPSC-derived retinal organoids 6, supporting future clinical trial development.

Sources cited
1
RPGRIP1 localizes to photoreceptor connecting cilium, anchors RPGR protein, contains C-terminal RID and coiled-coil domains, and is required for normal disk morphogenesis
PMID: 16352478
2
Multiple RPGRIP1 isoforms exist with distinct subcellular localizations; some participate in lysosome-related processes independent of RPGR
PMID: 15914599
3
RPGRIP1 mutations cause LCA6 accounting for 5-6% of LCA patients; photoreceptors lacking RPGRIP1 cannot maintain outer segments; central retinal photoreceptors survive into adulthood
PMID: 25414380
4
RPGRIP1 is among the five most frequently mutated genes in LCA cohorts with 8.8% mutation frequency
PMID: 31630094
5
Gene augmentation therapy with human RPGRIP1 in AAV8 vector slows photoreceptor degeneration and preserves photoreceptor function in murine LCA models
PMID: 20384479
6
RPGRIP1 gene augmentation therapy rescues disease phenotypes in human iPSC-derived retinal organoids and identifies biomarkers for variant pathogenicity assessment
PMID: 41270749
Disease Associationsβ“˜22
Leber congenital amaurosisOpen Targets
0.78Strong
cone-rod dystrophy 13Open Targets
0.75Strong
Leber congenital amaurosis 6Open Targets
0.74Strong
Cone rod dystrophyOpen Targets
0.73Strong
Retinal dystrophyOpen Targets
0.65Moderate
retinitis pigmentosaOpen Targets
0.61Moderate
cone-rod dystrophyOpen Targets
0.55Moderate
Leber congenital amaurosis 1Open Targets
0.49Moderate
retinopathyOpen Targets
0.46Moderate
cone dystrophyOpen Targets
0.43Moderate
autosomal recessive cone rod dystrophyOpen Targets
0.40Weak
Rod-cone dystrophyOpen Targets
0.38Weak
inherited retinal dystrophyOpen Targets
0.37Weak
eye diseaseOpen Targets
0.37Weak
food allergyOpen Targets
0.28Weak
Visual impairmentOpen Targets
0.27Weak
Color vision defectOpen Targets
0.27Weak
Horizontal nystagmusOpen Targets
0.27Weak
skin diseaseOpen Targets
0.26Weak
Abnormality of the eyeOpen Targets
0.26Weak
Cone-rod dystrophy 13UniProt
Leber congenital amaurosis 6UniProt
Pathogenic Variants178
NM_020366.4(RPGRIP1):c.1792C>T (p.Arg598Ter)Pathogenic
not provided|Leber congenital amaurosis 6;Cone-rod dystrophy 13|Leber congenital amaurosis 6|Leber congenital amaurosis|RPGRIP1-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 598
NM_020366.4(RPGRIP1):c.1892A>G (p.His631Arg)Pathogenic
Cone-rod dystrophy 13;Leber congenital amaurosis 6|Retinal dystrophy|Leber congenital amaurosis 6|Cone-rod dystrophy 13
β˜…β˜…β˜†β˜†2026β†’ Residue 631
NM_020366.4(RPGRIP1):c.2398G>A (p.Glu800Lys)Pathogenic
Abnormality of the eye|Cone-rod dystrophy 13;Leber congenital amaurosis 6|Leber congenital amaurosis
β˜…β˜…β˜†β˜†2026β†’ Residue 800
NM_020366.4(RPGRIP1):c.2895+1G>TPathogenic
Leber congenital amaurosis 6|Cone-rod dystrophy 13;Leber congenital amaurosis 6|Leber congenital amaurosis
β˜…β˜…β˜†β˜†2026
NM_020366.4(RPGRIP1):c.1060C>T (p.Gln354Ter)Pathogenic
Cone-rod dystrophy 13;Leber congenital amaurosis 6|Leber congenital amaurosis 6
β˜…β˜…β˜†β˜†2025β†’ Residue 354
NM_020366.4(RPGRIP1):c.832C>T (p.Arg278Ter)Pathogenic
Leber congenital amaurosis 6|Cone-rod dystrophy 13;Leber congenital amaurosis 6
β˜…β˜…β˜†β˜†2025β†’ Residue 278
NM_020366.4(RPGRIP1):c.420del (p.Gln140fs)Pathogenic
Leber congenital amaurosis 6|Retinal disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 140
NM_020366.4(RPGRIP1):c.2935C>T (p.Gln979Ter)Pathogenic
Retinitis pigmentosa|Cone-rod dystrophy 13;Leber congenital amaurosis 6|Retinal disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 979
NM_020366.4(RPGRIP1):c.2554C>T (p.Arg852Ter)Pathogenic
not provided|Retinal dystrophy|Leber congenital amaurosis 6;Cone-rod dystrophy 13|Leber congenital amaurosis 6|Cone-rod dystrophy 13
β˜…β˜…β˜†β˜†2025β†’ Residue 852
NM_020366.4(RPGRIP1):c.1111C>T (p.Arg371Ter)Pathogenic
Cone-rod dystrophy 13;Leber congenital amaurosis 6|Cone-rod dystrophy 13
β˜…β˜…β˜†β˜†2025β†’ Residue 371
NM_020366.4(RPGRIP1):c.2795dup (p.Pro932_Glu933insTer)Pathogenic
Leber congenital amaurosis 6;Cone-rod dystrophy 13
β˜…β˜…β˜†β˜†2025β†’ Residue 932
NM_020366.4(RPGRIP1):c.800+1G>APathogenic
Leber congenital amaurosis 1|not provided|Leber congenital amaurosis 6;Cone-rod dystrophy 13|Cone-rod dystrophy 13|Leber congenital amaurosis 6|Retinal dystrophy
β˜…β˜…β˜†β˜†2025
NM_020366.4(RPGRIP1):c.2941C>T (p.Arg981Ter)Pathogenic
Leber congenital amaurosis|Leber congenital amaurosis 1|Leber congenital amaurosis 6|Cone-rod dystrophy 13;Leber congenital amaurosis 6|Cone-rod dystrophy 13
β˜…β˜…β˜†β˜†2025β†’ Residue 981
NM_020366.4(RPGRIP1):c.2718dup (p.Asn907Ter)Pathogenic
Leber congenital amaurosis 6|not provided|Retinal dystrophy|Leber congenital amaurosis 6;Cone-rod dystrophy 13|Cone-rod dystrophy 13
β˜…β˜…β˜†β˜†2025β†’ Residue 907
NM_020366.4(RPGRIP1):c.1468-2A>GPathogenic
not provided|Cone-rod dystrophy 13;Leber congenital amaurosis 6|Leber congenital amaurosis|Leber congenital amaurosis 6
β˜…β˜…β˜†β˜†2025
NM_020366.4(RPGRIP1):c.3663_3666del (p.Lys1221fs)Pathogenic
Retinitis pigmentosa|Cone-rod dystrophy 13;Leber congenital amaurosis 6|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 1221
NM_020366.4(RPGRIP1):c.2302C>T (p.Arg768Ter)Pathogenic
Leber congenital amaurosis 6;Cone-rod dystrophy 13|not provided|Leber congenital amaurosis 6|Cone-rod dystrophy 13|RPGRIP1-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 768
NM_020366.4(RPGRIP1):c.2367+1G>APathogenic
Leber congenital amaurosis 6;Cone-rod dystrophy 13|not provided
β˜…β˜…β˜†β˜†2024
NM_020366.4(RPGRIP1):c.3565_3571del (p.Arg1189fs)Pathogenic
Leber congenital amaurosis 6|Leber congenital amaurosis
β˜…β˜…β˜†β˜†2024β†’ Residue 1189
NM_020366.4(RPGRIP1):c.1615_1624del (p.Glu539fs)Pathogenic
Leber congenital amaurosis 6|Cone-rod dystrophy 13;Leber congenital amaurosis 6|not provided|Leber congenital amaurosis|Cone-rod dystrophy|Retinal dystrophy
β˜…β˜…β˜†β˜†2024β†’ Residue 539
View on ClinVar β†—
Related Genes
NPHP4Protein interaction86%ABCA4Protein interaction86%CRXProtein interaction86%GUCY2DProtein interaction86%IMPDH1Protein interaction86%RPGRProtein interaction86%
Tissue Expression6 tissues
Bone Marrow
100%
Liver
47%
Lung
18%
Heart
15%
Ovary
8%
Brain
5%
Gene Interaction Network
Click a node to explore
RPGRIP1NPHP4ABCA4CRXGUCY2DIMPDH1RPGR
PROTEIN STRUCTURE
Preparing viewer…
PDB4QAM Β· 1.83 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.92LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.76 [0.63–0.92]
RankingsWhere RPGRIP1 stands among ~20K protein-coding genes
  • #8,009of 20,598
    Most Researched57
  • #405of 5,498
    Most Pathogenic Variants178 Β· top 10%
  • #8,413of 17,882
    Most Constrained (LOEUF)0.92
Genes detectedRPGRIP1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Genetic and clinical findings in a Chinese cohort with Leber congenital amaurosis and early onset severe retinal dystrophy.
PMID: 31630094
Br J Ophthalmol Β· 2020
1.00
2
[Ciliopathies].
PMID: 29534263
Klin Monbl Augenheilkd Β· 2018
0.90
3
RPGRIP1 is mutated in Leber congenital amaurosis: a mini-review.
PMID: 16352478
Ophthalmic Genet Β· 2005
0.80
4
Leber congenital amaurosis caused by mutations in RPGRIP1.
PMID: 25414380
Cold Spring Harb Perspect Med Β· 2014
0.70
5
RPGRIP1 and cone-rod dystrophy in dogs.
PMID: 22183349
Adv Exp Med Biol Β· 2012
0.60