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25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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RPL3
ribosomal protein L3
Chromosome 22 · 22q13.1
NCBI Gene: 6122Ensembl: ENSG00000100316.17HGNC: HGNC:10332UniProt: B3KS36
342PubMed Papers
20Diseases
6Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedHub Gene
RESEARCH IMPACT
Highly StudiedTrending
CLINICAL
FDA Approved Target
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA bindingstructural constituent of ribosomeprotein bindingcytosolinfluenzaDuchenne muscular dystrophycystic fibrosisinflammatory bowel disease
✦AI Summary

RPL3 is a structural component of the large ribosomal subunit (60S) essential for protein synthesis in eukaryotic cells 123. RPL3 undergoes histidine methylation at His-245 by the methyltransferase METTL18, a modification important for optimal ribosome biogenesis and function 4. RPL3 expression is tightly autoregulated through an alternative splicing-nonsense-mediated mRNA decay (AS-NMD) mechanism involving splicing factors hnRNP H1, NPM, and KHSRP, whereby RPL3 overexpression promotes production of decay-targeted mRNA isoforms 56. Tissue-specific RPL3 paralogue RPL3L modulates RPL3 expression levels and influences ribosomal subcellular localization and mitochondrial activity in cardiomyocytes, though not translational efficiency of specific transcripts 7. Clinically, RPL3 downregulation occurs in Phelan McDermid syndrome (PMS) associated with SHANK3 mutations, and restoring RPL3 expression rescues protein synthesis deficits and behavioral abnormalities in Shank3 knockout mice 8. Additionally, mutations in RPL3 confer resistance to linezolid antibiotic therapy and DON toxin, highlighting its role in drug and toxin sensitivity 910.

Sources cited
1
RPL3 is a component of the large ribosomal subunit responsible for protein synthesis
PMID: 12962325
2
RPL3 is a component of the large ribosomal subunit responsible for protein synthesis
PMID: 23636399
3
RPL3 is a component of the large ribosomal subunit responsible for protein synthesis
PMID: 32669547
4
METTL18 methylates RPL3 at His-245 (3-methylhistidine), affecting ribosome biogenesis and function
PMID: 33693809
5
RPL3 autoregulates expression through alternative splicing and NMD involving hnRNP H1, NPM, and KHSRP
PMID: 21705779
6
hnRNP H1 regulates rpL3 alternative splicing and pre-mRNA processing through G-rich elements in intron 3
PMID: 20100605
7
RPL3L paralog modulates RPL3 expression and ribosomal subcellular localization affecting mitochondrial activity
PMID: 36882085
8
RPL3 downregulation in Phelan McDermid syndrome associated with SHANK3 mutations; restoring RPL3 rescues protein synthesis and behavioral deficits
PMID: 40089604
9
RPL3 mutations are associated with linezolid antibiotic resistance
PMID: 29950810
10
RPL3 mutations confer resistance to DON toxin in wheat
PMID: 17216491
Disease Associationsⓘ20
influenzaOpen Targets
0.46Moderate
Duchenne muscular dystrophyOpen Targets
0.46Moderate
cystic fibrosisOpen Targets
0.39Weak
inflammatory bowel diseaseOpen Targets
0.20Weak
ShockOpen Targets
0.18Weak
ulcerative colitisOpen Targets
0.13Weak
hypertensionOpen Targets
0.12Weak
response to xenobiotic stimulusOpen Targets
0.12Weak
systemic lupus erythematosusOpen Targets
0.10Weak
Becker muscular dystrophyOpen Targets
0.10Suggestive
aniridiaOpen Targets
0.10Suggestive
non-Hodgkins lymphomaOpen Targets
0.09Suggestive
genetic disorderOpen Targets
0.09Suggestive
colorectal carcinomaOpen Targets
0.09Suggestive
hepatitis B virus infectionOpen Targets
0.08Suggestive
muscular dystrophyOpen Targets
0.07Suggestive
Alport syndromeOpen Targets
0.07Suggestive
diffuse large B-cell lymphomaOpen Targets
0.07Suggestive
hemophilia AOpen Targets
0.07Suggestive
hemophilia BOpen Targets
0.07Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Drug Targets6
ATALURENApproved
80S Ribosome modulator
Duchenne muscular dystrophy
CITATUZUMAB BOGATOXPhase I
Epithelial cell adhesion molecule binding agent
ELX-02Phase II
80S Ribosome modulator
cystic fibrosis
MT-3724Phase II
80S Ribosome inhibitor
diffuse large B-cell lymphoma
TELIMOMAB ARITOXPhase II
T-cell surface glycoprotein CD5 binding agent
hepatitis B virus infection
ZOLIMOMAB ARITOXPhase II
T-cell surface glycoprotein CD5 binding agent
arthritis
Related Genes
RPL39LShared pathway100%BTF3Protein interaction100%EEF1A1Protein interaction100%EEF1DProtein interaction100%EEF1GProtein interaction100%EEF2Protein interaction100%
Tissue Expression6 tissues
Ovary
100%
Bone Marrow
60%
Liver
37%
Lung
31%
Brain
21%
Heart
14%
Gene Interaction Network
Click a node to explore
RPL3RPL39LBTF3EEF1A1EEF1DEEF1GEEF2
PROTEIN STRUCTURE
Preparing viewer…
PDB8A3D · 1.67 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.17Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.06 [0.03–0.17]
RankingsWhere RPL3 stands among ~20K protein-coding genes
  • #937of 20,598
    Most Researched342 · top 5%
  • #772of 1,025
    FDA-Approved Drug Targets1
  • #272of 17,882
    Most Constrained (LOEUF)0.17 · top 5%
Genes detectedRPL3
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
Linezolid: a review of its properties, function, and use in critical care.
PMID: 29950810
Drug Des Devel Ther · 2018
1.00
2
Dynamic interplay between RPL3- and RPL3L-containing ribosomes modulates mitochondrial activity in the mammalian heart.
PMID: 36882085
Nucleic Acids Res · 2023
0.90
3
Protein Histidine Methylation.
PMID: 32188384
Curr Protein Pept Sci · 2020
0.80
4
Editor's Note to 'Autoregulatory circuit of human rpL3 expression requires hnRNP H1, NPM and KHSRP'.
PMID: 36330946
Nucleic Acids Res · 2022
0.70
5
METTL18 functions as a Phenotypic Regulator in Src-Dependent Oncogenic Responses of HER2-Negative Breast Cancer.
PMID: 39309445
Int J Biol Sci · 2024
0.64