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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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RRN3
RNA polymerase I transcription factor RRN3
Chromosome 16 · 16p13.11
NCBI Gene: 54700Ensembl: ENSG00000085721.13HGNC: HGNC:30346UniProt: B7ZB55
46PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleolustranscription initiation at RNA polymerase I promoterRNA polymerase I general transcription initiation factor activityprotein bindingneurodegenerative diseasecolorectal adenocarcinomabenign urinary system neoplasmobesity
✦AI Summary

RRN3 is a RNA polymerase I (Pol I)-specific transcription initiation factor essential for ribosomal RNA (rRNA) synthesis and cell growth. Functionally conserved between yeast and mammals 1, RRN3 forms competent pre-initiation complexes at rDNA promoters through both protein-protein interactions and direct DNA binding 2. Its HEAT repeat structure contains a serine patch whose phosphorylation represses Pol I transcription and regulates cell growth 3. Beyond canonical rRNA transcription, RRN3 functions dynamically in stress responses: under nutrient deprivation, phosphorylation at serine 199 diverts RRN3 from the nucleolus to regulate alternative polyadenylation of autophagy mRNAs, promoting cell survival 4. Clinically, elevated RRN3 associates with poor prognosis in pancreatic cancer, correlating with increased proliferation, invasion, and chemoresistance; RRN3 silencing sensitizes cancer cells to gemcitabine and paclitaxel 5. RRN3 upregulation also occurs during acute multiple sclerosis relapse 6. In zebrafish models, RRN3 heterozygosity affects ethanol sensitivity through altered neurochemical responses 7, suggesting RRN3 variants may influence drug metabolism and mental health outcomes in humans.

Sources cited
1
RRN3 is functionally conserved between yeast and humans as an RNA polymerase I transcription factor
PMID: 10758157
2
RRN3 contains a DNA-binding domain (amino acids 382-400) essential for rDNA transcription
PMID: 23393135
3
RRN3 has a HEAT repeat fold with a serine patch that regulates Pol I binding and cell growth when phosphorylated
PMID: 21940764
4
Nutrient stress phosphorylates RRN3 at serine 199, diverting it from rRNA transcription to regulate alternative polyadenylation of autophagy mRNAs
PMID: 41271632
5
High RRN3 expression associates with poor prognosis, increased proliferation, invasion, and chemoresistance in pancreatic cancer; RRN3 silencing enhances gemcitabine and paclitaxel sensitivity
PMID: 37119370
6
RRN3 biomarker is overexpressed during acute multiple sclerosis relapse
PMID: 30316990
7
RRN3 heterozygosity in zebrafish affects ethanol-induced locomotion and norepinephrine expression
PMID: 35006303
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.25Weak
colorectal adenocarcinomaOpen Targets
0.18Weak
benign urinary system neoplasmOpen Targets
0.17Weak
obesityOpen Targets
0.15Weak
type 2 diabetes mellitusOpen Targets
0.12Weak
chronic hepatitisOpen Targets
0.12Weak
metabolic syndromeOpen Targets
0.11Weak
alcohol drinkingOpen Targets
0.10Weak
diabetes mellitusOpen Targets
0.10Weak
overnutritionOpen Targets
0.10Suggestive
hypertensionOpen Targets
0.06Suggestive
response to xenobiotic stimulusOpen Targets
0.05Suggestive
intelligenceOpen Targets
0.05Suggestive
schizophreniaOpen Targets
0.05Suggestive
Huntington diseaseOpen Targets
0.04Suggestive
achalasia-alacrima syndromeOpen Targets
0.03Suggestive
cancerOpen Targets
0.02Suggestive
nerve plexus diseaseOpen Targets
0.02Suggestive
morbid obesityOpen Targets
0.02Suggestive
ovarian cancerOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
POLR1CProtein interaction100%POLR1AProtein interaction100%POLR1DProtein interaction100%POLIProtein interaction100%POLR2FProtein interaction99%POLR2LProtein interaction98%
Tissue Expression6 tissues
Bone Marrow
100%
Liver
64%
Brain
58%
Ovary
53%
Heart
48%
Lung
37%
Gene Interaction Network
Click a node to explore
RRN3POLR1CPOLR1APOLR1DPOLIPOLR2FPOLR2L
PROTEIN STRUCTURE
Preparing viewer…
PDB7OBA · 3.10 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.75LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.55 [0.41–0.75]
RankingsWhere RRN3 stands among ~20K protein-coding genes
  • #9,375of 20,598
    Most Researched46
  • #5,926of 17,882
    Most Constrained (LOEUF)0.75
Genes detectedRRN3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
RNA polymerase I transcription factor Rrn3 is functionally conserved between yeast and human.
PMID: 10758157
Proc Natl Acad Sci U S A · 2000
1.00
2
Rrn3 gene knockout affects ethanol-induced locomotion in adult heterozygous zebrafish.
PMID: 35006303
Psychopharmacology (Berl) · 2022
0.90
3
High RRN3 expression is associated with malignant characteristics and poor prognosis in pancreatic cancer.
PMID: 37119370
Int J Clin Oncol · 2023
0.80
4
Autophagy regulates rRNA synthesis.
PMID: 35993412
Nucleus · 2022
0.70
5
Nutrient stress diverts RRN3 from rRNA transcription to alternative polyadenylation of autophagy mRNAs in ovarian cancer.
PMID: 41271632
Cell Death Dis · 2025
0.60