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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
RXYLT1
ribitol xylosyltransferase 1
Chromosome 12 Β· 12q14.2
NCBI Gene: 10329Ensembl: ENSG00000118600.13HGNC: HGNC:13530UniProt: A0A8I5KWX9
25PubMed Papers
21Diseases
0Drugs
56Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingribitol beta-1,4-xylosyltransferase activityprotein O-linked glycosylation via mannoseGolgi apparatusmuscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 10muscular dystrophy-dystroglycanopathy, type Amuscle-eye-brain diseasegenetic disorder
✦AI Summary

RXYLT1 (also known as TMEM5) is a Golgi-localized UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltransferase that catalyzes transfer of xylose to ribitol 5-phosphate, forming the XylΞ²1-4Rbo5P linkage on O-mannosyl glycans 1. This enzyme participates in biosynthesis of the phosphorylated O-mannosyl trisaccharide on alpha-dystroglycan (DAG1), a critical modification required for high-affinity binding to laminin G-domain-containing extracellular matrix proteins 23. RXYLT1 functions as part of an enzymatic complex with fukutin and FKRP to facilitate prompt glycosylation of dystroglycan 4. RXYLT1 mutations cause severe congenital dystroglycanopathies, most notably Walker-Warburg syndrome (WWS), accounting for approximately 9% of genetically confirmed cases 5. Pathogenic variants have also been identified in cobblestone lissencephaly, muscle-eye-brain disease, and other forms of dystroglycanopathy 6. Clinical presentations include macrocephaly, cobblestone cortical dysplasia, hydrocephalus, ocular abnormalities (microphthalmia, persistent hyaloidal arteries), and muscular dystrophy with elevated creatine kinase levels 78. Notably, identical RXYLT1 genotypes can produce variable phenotypic severity between siblings 5, suggesting genetic modifiers influence disease manifestation.

Sources cited
1
RXYLT1/TMEM5 catalyzes transfer of UDP-D-xylose to ribitol 5-phosphate forming XylΞ²1-4Rbo5P linkage on O-mannosyl glycans
PMID: 27733679
2
O-mannosyl glycan modification on alpha-dystroglycan is required for binding laminin G-like domain-containing extracellular proteins
PMID: 25279699
3
Phosphorylated O-mannosyl trisaccharide on alpha-dystroglycan requires proper glycosylation for function
PMID: 27601598
4
TMEM5 forms a functional complex with fukutin and FKRP, maintaining individual enzyme activities for dystroglycan glycosylation
PMID: 29477842
5
RXYLT1/TMEM5 mutations cause Walker-Warburg syndrome (approximately 9% of genetically confirmed cases) with variable retinal manifestations despite identical genotype
PMID: 36007194
6
TMEM5 mutations identified in cobblestone lissencephaly and severe dystroglycanopathies, frequently associated with gonadal dysgenesis and neural tube defects
PMID: 23217329
7
TMEM5 mutations in Walker-Warburg syndrome present with macrocephaly, cobblestone cortex, hydrocephalus, and ocular abnormalities
PMID: 33199158
8
TMEM5-associated dystroglycanopathy can present with milder muscular phenotype and polymicrogyria, expanding disease spectrum
PMID: 27212206
Disease Associationsβ“˜21
muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 10Open Targets
0.74Strong
muscular dystrophy-dystroglycanopathy, type AOpen Targets
0.50Moderate
muscle-eye-brain diseaseOpen Targets
0.37Weak
genetic disorderOpen Targets
0.19Weak
preeclampsiaOpen Targets
0.07Suggestive
Griscelli diseaseOpen Targets
0.06Suggestive
Sacroiliac arthritisOpen Targets
0.05Suggestive
attention deficit hyperactivity disorderOpen Targets
0.05Suggestive
Griscelli disease type 3Open Targets
0.05Suggestive
Griscelli syndrome type 3Open Targets
0.05Suggestive
hereditary attention deficit-hyperactivity disorderOpen Targets
0.04Suggestive
uncombable hair syndromeOpen Targets
0.04Suggestive
oculocutaneous albinism type 3Open Targets
0.04Suggestive
Griscelli disease type 1Open Targets
0.04Suggestive
Griscelli syndrome type 1Open Targets
0.04Suggestive
oculocerebral hypopigmentation syndrome, Cross typeOpen Targets
0.04Suggestive
schizophrenia 15Open Targets
0.04Suggestive
brain aneurysmOpen Targets
0.04Suggestive
Piebald trait - neurologic defectsOpen Targets
0.04Suggestive
piebald trait-neurologic defects syndromeOpen Targets
0.04Suggestive
Muscular dystrophy-dystroglycanopathy congenital with brain and eye anomalies A10UniProt
Pathogenic Variants56
NM_014254.3(RXYLT1):c.1018C>T (p.Arg340Ter)Pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 10|not provided|Walker-Warburg congenital muscular dystrophy
β˜…β˜…β˜†β˜†2025β†’ Residue 340
NM_014254.3(RXYLT1):c.92del (p.Arg31fs)Pathogenic
not provided|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 10
β˜…β˜…β˜†β˜†2025β†’ Residue 31
NM_014254.3(RXYLT1):c.1016A>G (p.Tyr339Cys)Pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 10|Walker-Warburg congenital muscular dystrophy|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 339
NM_014254.3(RXYLT1):c.139del (p.Ala47fs)Pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 10|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 47
NM_014254.3(RXYLT1):c.325+1G>TLikely pathogenic
not provided|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 10
β˜…β˜…β˜†β˜†2025
NM_014254.3(RXYLT1):c.123_150del (p.Leu43fs)Pathogenic
not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 43
NM_014254.3(RXYLT1):c.997G>A (p.Gly333Arg)Pathogenic
not provided|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 10
β˜…β˜…β˜†β˜†2024β†’ Residue 333
NM_014254.3(RXYLT1):c.256C>T (p.Gln86Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 86
NM_014254.3(RXYLT1):c.389G>A (p.Trp130Ter)Pathogenic
not provided|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 10
β˜…β˜…β˜†β˜†2024β†’ Residue 130
NM_014254.3(RXYLT1):c.1064_1091del (p.Asp355fs)Pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 10|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 355
NM_014254.3(RXYLT1):c.641del (p.Phe214fs)Pathogenic
not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 214
NM_014254.3(RXYLT1):c.429-2A>GPathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 10|not provided
β˜…β˜…β˜†β˜†2023
NM_014254.3(RXYLT1):c.390G>A (p.Trp130Ter)Pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 10|not provided
β˜…β˜…β˜†β˜†2022β†’ Residue 130
NM_014254.3(RXYLT1):c.997G>C (p.Gly333Arg)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 333
NM_014254.3(RXYLT1):c.795del (p.Arg266fs)Pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 10|not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 266
NM_014254.3(RXYLT1):c.421C>T (p.Gln141Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 141
NM_014254.3(RXYLT1):c.75C>A (p.Tyr25Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 25
NM_014254.3(RXYLT1):c.947del (p.Lys316fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 316
NM_014254.3(RXYLT1):c.239_240del (p.Arg80fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 80
NM_014254.3(RXYLT1):c.839C>A (p.Ser280Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 280
View on ClinVar β†—
Related Genes
POMT1Protein interaction99%POMT2Protein interaction99%POMGNT1Protein interaction99%DAG1Protein interaction98%DPM1Protein interaction94%DPM2Protein interaction94%
Tissue Expression6 tissues
Brain
100%
Heart
69%
Ovary
62%
Liver
58%
Lung
34%
Bone Marrow
20%
Gene Interaction Network
Click a node to explore
RXYLT1POMT1POMT2POMGNT1DAG1DPM1DPM2
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q9Y2B1
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.09LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.84 [0.65–1.09]
RankingsWhere RXYLT1 stands among ~20K protein-coding genes
  • #13,057of 20,598
    Most Researched25
  • #1,234of 5,498
    Most Pathogenic Variants56 Β· top quartile
  • #11,104of 17,882
    Most Constrained (LOEUF)1.09
Genes detectedRXYLT1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
A 20-year Clinical and Genetic Neuromuscular Cohort Analysis in Lebanon: An International Effort.
PMID: 34602496
J Neuromuscul Dis Β· 2022
1.00
2
Involvement of muscle satellite cell dysfunction in neuromuscular disorders: Expanding the portfolio of satellite cell-opathies.
PMID: 35302338
Eur J Transl Myol Β· 2022
0.90
3
RETINAL MANIFESTATIONS OF WALKER-WARBURG SYNDROME IN TWO SIBLINGS WITH RXYLT1 MUTATIONS.
PMID: 36007194
Retin Cases Brief Rep Β· 2024
0.80
4
Cell endogenous activities of fukutin and FKRP coexist with the ribitol xylosyltransferase, TMEM5.
PMID: 29477842
Biochem Biophys Res Commun Β· 2018
0.70
5
Identification of mutations in TMEM5 and ISPD as a cause of severe cobblestone lissencephaly.
PMID: 23217329
Am J Hum Genet Β· 2012
0.60