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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
POMT1
protein O-mannosyltransferase 1
Chromosome 9 Β· 9q34.13
NCBI Gene: 10585Ensembl: ENSG00000130714.19HGNC: HGNC:9202UniProt: A0A140VKE0
59PubMed Papers
23Diseases
0Drugs
197Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein O-linked glycosylation via mannosemannosyltransferase activityendoplasmic reticulum membranedolichyl-phosphate-mannose-protein mannosyltransferase activitymuscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1autosomal recessive limb-girdle muscular dystrophy type 2Kmuscular dystrophy-dystroglycanopathy, type A
✦AI Summary

POMT1 (protein O-mannosyltransferase 1) catalyzes the transfer of mannosyl residues to serine and threonine hydroxyl groups on proteins, functioning as a key enzyme in the O-mannosylation pathway. This enzymatic activity requires heterodimeric complex formation with POMT2; neither protein exhibits catalytic activity alone 1. POMT1 is essentially dedicated to O-mannosylation of alpha-dystroglycan (Ξ±-DG), a critical component of the dystrophin-glycoprotein complex that anchors muscle fibers to the extracellular matrix at the basement membrane 2. Mutations in POMT1 cause autosomal recessive muscular dystrophy-dystroglycanopathies (MDDGs), characterized by defective Ξ±-DG glycosylation 1. Clinical manifestations span a broad phenotypic spectrum including congenital muscular dystrophy with brain and eye anomalies (Walker-Warburg syndrome) or later-onset limb-girdle muscular dystrophy, frequently accompanied by intellectual disability and neurological abnormalities 3. In a large Chinese dystroglycanopathy cohort, POMT1 mutations (16 patients) were associated with mental retardation as a distinguishing clinical feature 4. POMT1 is expressed prominently in astrocytes and neurons, suggesting roles in basement membrane formation and neuronal migration during CNS development 2. Over 76 disease-associated POMT1 mutations have been reported, enabling molecular diagnosis and genetic counseling for affected families 1.

Sources cited
1
POMT1 is a critical enzyme in protein O-mannosylation; mutations cause muscular dystrophy-dystroglycanopathies with variable phenotypes and intellectual disability
PMID: 30454682
2
POMT1 is expressed in astrocytes and neurons; involved in Ξ±-dystroglycan glycosylation and CNS basement membrane formation
PMID: 15614444
3
POMT1 mutations cause Walker-Warburg syndrome with congenital muscular dystrophy, brain and eye abnormalities, and defective Ξ±-dystroglycan glycosylation
PMID: 16887026
4
POMT1 mutations identified in dystroglycanopathy patients; associated with mental retardation as a clinical feature
PMID: 33200426
⚠Limited data available β€” This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜23
muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1Open Targets
0.83Strong
muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1Open Targets
0.80Strong
autosomal recessive limb-girdle muscular dystrophy type 2KOpen Targets
0.79Strong
muscular dystrophy-dystroglycanopathy, type AOpen Targets
0.67Moderate
autosomal recessive limb-girdle muscular dystrophyOpen Targets
0.63Moderate
limb-girdle muscular dystrophy-dystroglycanopathy, type c1Open Targets
0.56Moderate
myopathy caused by variation in POMT1Open Targets
0.51Moderate
genetic disorderOpen Targets
0.51Moderate
neuromuscular disease caused by qualitative or quantitative defects of alpha-dystroglycanOpen Targets
0.47Moderate
Abnormal brainstem morphologyOpen Targets
0.43Moderate
Dysgenesis of the cerebellar vermisOpen Targets
0.43Moderate
VentriculomegalyOpen Targets
0.43Moderate
limb-girdle muscular dystrophyOpen Targets
0.37Weak
muscle-eye-brain diseaseOpen Targets
0.37Weak
cobblestone lissencephalyOpen Targets
0.37Weak
congenital muscular dystrophy with cerebellar involvementOpen Targets
0.37Weak
congenital muscular dystrophy with intellectual disabilityOpen Targets
0.37Weak
congenital muscular dystrophy without intellectual disabilityOpen Targets
0.37Weak
cervical carcinomaOpen Targets
0.34Weak
Abnormality of the nervous systemOpen Targets
0.34Weak
Muscular dystrophy-dystroglycanopathy congenital with brain and eye anomalies A1UniProt
Muscular dystrophy-dystroglycanopathy congenital with impaired intellectual development B1UniProt
Muscular dystrophy-dystroglycanopathy limb-girdle C1UniProt
Pathogenic Variants197
NM_001077365.2(POMT1):c.1195dup (p.Leu399fs)Pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1|Walker-Warburg congenital muscular dystrophy;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1;Autosomal recessive limb-girdle muscular dystrophy type 2K|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1;Autosomal recessive limb-girdle muscular dystrophy type 2K
β˜…β˜…β˜†β˜†2026β†’ Residue 399
NM_001077365.2(POMT1):c.1210C>T (p.Gln404Ter)Pathogenic
not provided|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1|Autosomal recessive limb-girdle muscular dystrophy type 2K;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1;Walker-Warburg congenital muscular dystrophy
β˜…β˜…β˜†β˜†2026β†’ Residue 404
NM_001077365.2(POMT1):c.132A>C (p.Glu44Asp)Pathogenic
not provided|Autosomal recessive limb-girdle muscular dystrophy type 2K;Walker-Warburg congenital muscular dystrophy;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1|Autosomal recessive limb-girdle muscular dystrophy type 2K;Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1|POMT1-related disorder|Autosomal recessive limb-girdle muscular dystrophy
β˜…β˜…β˜†β˜†2026β†’ Residue 44
NM_001077365.2(POMT1):c.2101dup (p.Asp701fs)Pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1|not provided|Autosomal recessive limb-girdle muscular dystrophy type 2K;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1;Walker-Warburg congenital muscular dystrophy|POMT1-related disorder|Abnormal brainstem morphology;Ventriculomegaly|Inborn genetic diseases|Autosomal recessive limb-girdle muscular dystrophy type 2K;Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1|Muscular dystrophy-dystroglycanopathy, type C|Autosomal recessive limb-girdle muscular dystrophy
β˜…β˜…β˜†β˜†2026β†’ Residue 701
NM_001077365.2(POMT1):c.174CTT[2] (p.Phe60del)Pathogenic
not provided|Autosomal recessive limb-girdle muscular dystrophy type 2K|Autosomal recessive limb-girdle muscular dystrophy type 2K;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1;Walker-Warburg congenital muscular dystrophy|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1|Autosomal recessive limb-girdle muscular dystrophy type 2K;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1;Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1
β˜…β˜…β˜†β˜†2026β†’ Residue 60
NM_001077365.2(POMT1):c.1657del (p.Leu553fs)Pathogenic
not provided|Walker-Warburg congenital muscular dystrophy;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1;Autosomal recessive limb-girdle muscular dystrophy type 2K|Autosomal recessive limb-girdle muscular dystrophy|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1
β˜…β˜…β˜†β˜†2025β†’ Residue 553
NM_001077365.2(POMT1):c.313C>T (p.Arg105Cys)Pathogenic
Autosomal recessive limb-girdle muscular dystrophy type 2K;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1;Walker-Warburg congenital muscular dystrophy|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1|Autosomal recessive limb-girdle muscular dystrophy type 2K;Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1
β˜…β˜…β˜†β˜†2025β†’ Residue 105
NM_001077365.2(POMT1):c.1798C>T (p.Arg600Ter)Pathogenic
not provided|Walker-Warburg congenital muscular dystrophy;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1;Autosomal recessive limb-girdle muscular dystrophy type 2K|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1
β˜…β˜…β˜†β˜†2025β†’ Residue 600
NM_001077365.2(POMT1):c.1087C>T (p.Gln363Ter)Pathogenic
not provided|Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1|Autosomal recessive limb-girdle muscular dystrophy type 2K;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1;Walker-Warburg congenital muscular dystrophy|Limb-girdle muscular dystrophy due to POMK deficiency|Autosomal recessive limb-girdle muscular dystrophy type 2K;Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1|Autosomal recessive limb-girdle muscular dystrophy
β˜…β˜…β˜†β˜†2025β†’ Residue 363
NM_001077365.2(POMT1):c.264G>A (p.Trp88Ter)Pathogenic
Walker-Warburg congenital muscular dystrophy;Autosomal recessive limb-girdle muscular dystrophy type 2K;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1
β˜…β˜…β˜†β˜†2025β†’ Residue 88
NM_001077365.2(POMT1):c.1175+1G>APathogenic
Autosomal recessive limb-girdle muscular dystrophy type 2K;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1;Walker-Warburg congenital muscular dystrophy|Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1|not provided
β˜…β˜…β˜†β˜†2025
NM_001077365.2(POMT1):c.130G>A (p.Glu44Lys)Pathogenic
Walker-Warburg congenital muscular dystrophy;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1;Autosomal recessive limb-girdle muscular dystrophy type 2K|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1
β˜…β˜…β˜†β˜†2025β†’ Residue 44
NM_001077365.2(POMT1):c.291del (p.Ser97fs)Pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1|Walker-Warburg congenital muscular dystrophy;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1;Autosomal recessive limb-girdle muscular dystrophy type 2K|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1;Autosomal recessive limb-girdle muscular dystrophy type 2K
β˜…β˜…β˜†β˜†2025β†’ Residue 97
NM_001077365.2(POMT1):c.1176-2A>GPathogenic
Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1;Autosomal recessive limb-girdle muscular dystrophy type 2K;Walker-Warburg congenital muscular dystrophy|not provided|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1|Thyroid cancer, nonmedullary, 1|Ovarian serous cystadenocarcinoma
β˜…β˜…β˜†β˜†2025
NM_001077365.2(POMT1):c.633C>G (p.Tyr211Ter)Pathogenic
not provided|Autosomal recessive limb-girdle muscular dystrophy type 2K;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1;Walker-Warburg congenital muscular dystrophy
β˜…β˜…β˜†β˜†2025β†’ Residue 211
NM_001077365.2(POMT1):c.1698+1G>APathogenic
Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1;Autosomal recessive limb-girdle muscular dystrophy type 2K;Walker-Warburg congenital muscular dystrophy|not provided|Autosomal recessive limb-girdle muscular dystrophy|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1
β˜…β˜…β˜†β˜†2025
NM_001077365.2(POMT1):c.773TCT[1] (p.Phe259del)Likely pathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1|Autosomal recessive limb-girdle muscular dystrophy type 2K
β˜…β˜…β˜†β˜†2025β†’ Residue 259
NM_001077365.2(POMT1):c.1792C>T (p.Arg598Ter)Pathogenic
not provided|Autosomal recessive limb-girdle muscular dystrophy type 2K;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1;Walker-Warburg congenital muscular dystrophy|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1
β˜…β˜…β˜†β˜†2025β†’ Residue 598
NM_001077365.2(POMT1):c.986+1G>APathogenic
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1|Autosomal recessive limb-girdle muscular dystrophy type 2K;Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1|Autosomal recessive limb-girdle muscular dystrophy type 2K;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1;Walker-Warburg congenital muscular dystrophy|Thymoma
β˜…β˜…β˜†β˜†2025
NM_001077365.2(POMT1):c.605+1G>CPathogenic
Walker-Warburg congenital muscular dystrophy;Autosomal recessive limb-girdle muscular dystrophy type 2K;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1|Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1|Autosomal recessive limb-girdle muscular dystrophy type 2K;Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1;Muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1
β˜…β˜…β˜†β˜†2025
View on ClinVar β†—
Related Genes
RXYLT1Protein interaction99%DPM1Protein interaction99%DPM2Protein interaction99%DMDProtein interaction98%POMKProtein interaction98%AGRNProtein interaction83%
Tissue Expression6 tissues
Ovary
100%
Liver
81%
Heart
70%
Bone Marrow
68%
Lung
59%
Brain
49%
Gene Interaction Network
Click a node to explore
POMT1RXYLT1DPM1DPM2DMDPOMKAGRN
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q5JT02
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.00LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.84 [0.71–1.00]
RankingsWhere POMT1 stands among ~20K protein-coding genes
  • #7,803of 20,598
    Most Researched59
  • #351of 5,498
    Most Pathogenic Variants197 Β· top 10%
  • #9,695of 17,882
    Most Constrained (LOEUF)1.00
Genes detectedPOMT1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
A 20-year Clinical and Genetic Neuromuscular Cohort Analysis in Lebanon: An International Effort.
PMID: 34602496
J Neuromuscul Dis Β· 2022
1.00
2
Genetic variations and clinical spectrum of dystroglycanopathy in a large cohort of Chinese patients.
PMID: 33200426
Clin Genet Β· 2021
0.90
3
Clinical and Genomic Evaluation of 207 Genetic Myopathies in the Indian Subcontinent.
PMID: 33250842
Front Neurol Β· 2020
0.80
4
Involvement of muscle satellite cell dysfunction in neuromuscular disorders: Expanding the portfolio of satellite cell-opathies.
PMID: 35302338
Eur J Transl Myol Β· 2022
0.70
5
Metabolic Cardiomyopathies and Cardiac Defects in Inherited Disorders of Carbohydrate Metabolism: A Systematic Review.
PMID: 37239976
Int J Mol Sci Β· 2023
0.60