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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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RYBP
RING1 and YY1 binding protein
Chromosome 3 · 3p13
NCBI Gene: 23429Ensembl: ENSG00000163602.12HGNC: HGNC:10480UniProt: Q8N488
94PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleic acid bindingprotein bindingchromatin remodelingnegative regulation of proteasomal ubiquitin-dependent protein catabolic processallergic rhinitisEczematoid dermatitisasthmaallergic disease
✦AI Summary

RYBP (RING1 and YY1 binding protein) is a core component of the noncanonical Polycomb Repressive Complex 1 (PRC1) that functions as a key epigenetic regulator of gene expression 1. Its primary function involves mediating monoubiquitination of histone H2A at lysine 119 (H2AK119ub), which establishes and maintains repressive chr3 domains essential for transcriptional silencing during development 2. Mechanistically, RYBP recognizes existing H2AK119ub through its N-terminal zinc-finger domain and recruits E3 ligase components (RING1B and BMI1) to catalyze both intra- and inter-nucleosome ubiquitination in a positive-feedback loop 2. RYBP also interacts with trithorax group proteins to regulate super-enhancer activity and transcriptional activation, demonstrating dual roles in chr3 regulation 3. Beyond epigenetic functions, RYBP regulates TP53 stability and modulates glucose-induced tumor cell metabolism 4. Clinically, RYBP loss is implicated in multiple malignancies including prostate cancer, where it acts as a potential tumor suppressor 5, and hepatocellular carcinoma, where reduced expression correlates with poor prognosis 6. Recent evidence links RYBP dysfunction to severe neurodevelopmental disorders and congenital anomalies through variants affecting the zinc-finger domain 7, while RYBP promotes HIV-1 latency through H2AK119ub deposition 8. These findings establish RYBP as a multifunctional epigenetic regulator critical for development and disease prevention.

Sources cited
1
RYBP mediates H2AK119ub restoration through asymmetrical nucleosome binding and positive-feedback epigenetic regulation
PMID: 39537923
2
RYBP functions in epigenetic control of transcription and participates in both PcG and trxG-mediated mechanisms
PMID: 29665352
3
RYBP occupies super-enhancers and cooperates with trithorax group proteins to regulate transcriptional activation
PMID: 39604829
4
RYBP glucose-stabilization suppresses tumor cell aerobic glycolysis and migration
PMID: 38735205
5
RYBP is implicated as a potential cooperative tumor suppressor in prostate cancer
PMID: 20579941
6
RYBP expression is reduced in hepatocellular carcinoma and correlates with poor prognosis
PMID: 28028181
7
De novo RYBP variants cause severe neurodevelopmental disorder and congenital anomalies affecting the zinc-finger domain
PMID: 39891528
8
RYBP promotes HIV-1 latency through YY1-recruitment and H2AK119ub-mediated transcriptional silencing
PMID: 40361117
Disease Associationsⓘ20
allergic rhinitisOpen Targets
0.44Moderate
Eczematoid dermatitisOpen Targets
0.43Moderate
asthmaOpen Targets
0.39Weak
allergic diseaseOpen Targets
0.39Weak
intelligenceOpen Targets
0.34Weak
smoking initiationOpen Targets
0.33Weak
respiratory system diseaseOpen Targets
0.31Weak
diverticular diseaseOpen Targets
0.31Weak
Abnormal thrombosisOpen Targets
0.31Weak
mathematical abilityOpen Targets
0.30Weak
liver diseaseOpen Targets
0.30Weak
osteoarthritisOpen Targets
0.30Weak
vascular diseaseOpen Targets
0.28Weak
cholelithiasisOpen Targets
0.27Weak
atopic eczemaOpen Targets
0.26Weak
complex neurodevelopmental disorderOpen Targets
0.18Weak
kidney diseaseOpen Targets
0.17Weak
hepatocellular carcinomaOpen Targets
0.10Suggestive
infectionOpen Targets
0.08Suggestive
HypercholesterolemiaOpen Targets
0.08Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
YY1Protein interaction100%PHC2Protein interaction100%CBX8Protein interaction100%COMMD3-BMI1Protein interaction99%PHC3Protein interaction99%DCAF7Protein interaction99%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
82%
Lung
62%
Ovary
53%
Liver
40%
Heart
40%
Gene Interaction Network
Click a node to explore
RYBPYY1PHC2CBX8COMMD3-BMI1PHC3DCAF7
PROTEIN STRUCTURE
Preparing viewer…
PDB3IXS · 1.70 Å · X-ray
View on RCSB ↗
RankingsWhere RYBP stands among ~20K protein-coding genes
  • #5,103of 20,598
    Most Researched94 · top quartile
Genes detectedRYBP
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Integrative genomic profiling of human prostate cancer.
PMID: 20579941
Cancer Cell · 2010
1.00
2
Read-write mechanisms of H2A ubiquitination by Polycomb repressive complex 1.
PMID: 39537923
Nature · 2024
0.90
3
Epigenetic and non-epigenetic functions of the RYBP protein in development and disease.
PMID: 29665352
Mech Ageing Dev · 2018
0.80
4
Polycomb protein RYBP facilitates super-enhancer activity.
PMID: 39604829
Mol Med · 2024
0.70
5
De novo variants in RYBP are associated with a severe neurodevelopmental disorder and congenital anomalies.
PMID: 39891528
Genet Med · 2025
0.60