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GeneE
25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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S100A6
S100 calcium binding protein A6
Chromosome 1 · 1q21.3
NCBI Gene: 6277Ensembl: ENSG00000197956.11HGNC: HGNC:10496UniProt: P06703
204PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
RESEARCH IMPACT
Trending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nuclear envelopecytoplasmcytosolextracellular exosomeneoplasmnon-alcoholic fatty liver diseaseosteosarcomacholangiocarcinoma
✦AI Summary

S100A6 (calcyclin) is a calcium-binding protein that functions as a critical regulator of cell proliferation, migration, and metastasis, particularly in cancer contexts. 1 Structurally, S100A6 contains two EF-hand calcium-binding domains and interacts with multiple intracellular and extracellular proteins in a calcium-dependent manner. 2 In hepatocellular carcinoma (HCC), S100A6 marks a pro-metastatic epithelial-mesenchymal transition (EMT) subtype of tumor cells that shows activation of SMAD3 and TGF-β signaling pathways. 3 S100A6 promotes lymph node metastasis through dual mechanisms: tumor cell-intrinsic effects enhancing migration and invasion, and paracrine signaling that activates the RAGE/NF-κB/VEGF-D pathway in lymphatic endothelial cells to promote lymphangiogenesis. 4 High S100A6 expression correlates with poor overall survival in pancreatic cancer and modulates the tumor immune microenvironment. 5 Beyond oncology, S100A6 regulates cytoskeleton dynamics, cell stress responses, and cell differentiation. 1 Its expression is regulated by transcription factors including c-Myc, p53, and NF-κB and is modulated by epigenetic mechanisms. 1 S100A6 serves as a biomarker for disease progression and stratification in metabolic-associated steatohepatitis (MASH). 6 The protein can be secreted and acts extracellularly through RAGE and integrin β1 signaling. 7

Sources cited
1
S100A6+ cells represent a pro-metastatic EMT subtype in HCC with SMAD3/TGF-β pathway activation; targeting tumor-fibroblast feedback loops suppresses metastasis
PMID: 39095854
2
S100A6 is a calcium-binding protein involved in cell proliferation, invasion, migration, and expressed in multiple cancer types
PMID: 37509175
3
S100A6 functions in cytoskeleton, cell stress, proliferation, and differentiation through calcium-dependent protein interactions and is regulated by transcription factors and epigenetic modifications
PMID: 37670392
4
S100A6 is highly expressed in pancreatic cancer, correlates with worse overall survival, and is involved in cancer and glycometabolism pathways with effects on tumor immune microenvironment
PMID: 35432196
5
S100A6 drives lymph node metastasis in liver cancer via RAGE/NF-κB/VEGF-D pathway activation in lymphatic endothelial cells and enhances tumor cell migration/invasion
PMID: 38350547
6
S100A6 is a component of the APASHA plasma biomarker model that stratifies metabolic-associated steatohepatitis (MASH) risk in obese individuals
PMID: 40250425
7
S100A6 regulates intracellular proliferation, apoptosis, cytoskeleton dynamics, and cellular stress responses; can be secreted with extracellular effects mediated by RAGE and integrin β1
PMID: 28417162
Disease Associationsⓘ20
neoplasmOpen Targets
0.10Weak
non-alcoholic fatty liver diseaseOpen Targets
0.09Suggestive
osteosarcomaOpen Targets
0.08Suggestive
cholangiocarcinomaOpen Targets
0.08Suggestive
glioblastoma multiformeOpen Targets
0.08Suggestive
myelodysplastic syndromeOpen Targets
0.08Suggestive
pachyonychia congenitaOpen Targets
0.08Suggestive
cervical cancerOpen Targets
0.08Suggestive
gliomaOpen Targets
0.08Suggestive
Hepatic steatosisOpen Targets
0.08Suggestive
primary biliary cirrhosisOpen Targets
0.07Suggestive
breast cancerOpen Targets
0.07Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.07Suggestive
Miyoshi myopathyOpen Targets
0.07Suggestive
esophageal squamous cell carcinomaOpen Targets
0.07Suggestive
gastric cancerOpen Targets
0.06Suggestive
attention deficit hyperactivity disorderOpen Targets
0.06Suggestive
lumbar disc degenerationOpen Targets
0.06Suggestive
acute lymphoblastic leukemiaOpen Targets
0.06Suggestive
prostate cancerOpen Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CACYBPProtein interaction100%ANXA11Protein interaction99%TP53Protein interaction94%RB1Protein interaction92%SPRR1AProtein interaction89%GAPDHProtein interaction89%
Tissue Expression6 tissues
Lung
100%
Bone Marrow
36%
Heart
25%
Ovary
23%
Brain
7%
Liver
3%
Gene Interaction Network
Click a node to explore
S100A6CACYBPANXA11TP53RB1SPRR1AGAPDH
PROTEIN STRUCTURE
Preparing viewer…
PDB1K8U · 1.15 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.75LoF Tolerant
pLIⓘ
0.01Tolerant
Observed/Expected LoF0.92 [0.47–1.75]
RankingsWhere S100A6 stands among ~20K protein-coding genes
  • #2,062of 20,598
    Most Researched204 · top quartile
  • #16,322of 17,882
    Most Constrained (LOEUF)1.75
Genes detectedS100A6
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
Single-cell tumor heterogeneity landscape of hepatocellular carcinoma: unraveling the pro-metastatic subtype and its interaction loop with fibroblasts.
PMID: 39095854
Mol Cancer · 2024
1.00
2
The Role of S100A6 in Human Diseases: Molecular Mechanisms and Therapeutic Potential.
PMID: 37509175
Biomolecules · 2023
0.90
3
S100A6: molecular function and biomarker role.
PMID: 37670392
Biomark Res · 2023
0.80
4
Characterization of macrophages in ischemia-reperfusion injury-induced acute kidney injury based on single-cell RNA-Seq and bulk RNA-Seq analysis.
PMID: 38428147
Int Immunopharmacol · 2024
0.76
5
Identification of the Shared Gene Signatures and Biological Mechanism in Type 2 Diabetes and Pancreatic Cancer.
PMID: 35432196
Front Endocrinol (Lausanne) · 2022
0.70