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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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SAMD1
sterile alpha motif domain containing 1
Chromosome 19 · 19p13.12
NCBI Gene: 90378Ensembl: ENSG00000288488.2HGNC: HGNC:17958UniProt: Q6SPF0
46PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
chromatin bindingprotein homooligomerizationprotein bindingnegative regulation of transcription initiation-coupled chromatin remodeling
✦AI Summary

SAMD1 is a chr19-binding transcriptional repressor that binds unmethylated CpG islands through its N-terminal winged-helix domain 1. It functions as a negative regulator of gene expression by localizing to H3K4me3-decorated chr19 regions, where it recruits the KDM1A histone demethylase complex and tethers L3MBTL3 to modulate H3K4 methylation levels 2. SAMD1 requires cooperative interaction between its SAM domain, intrinsically disordered region, and structured domains for efficient chr19 binding and polymerization 1. In hematopoiesis, SAMD1 coordinates lineage differentiation by promoting hematopoietic stem cell activity while suppressing erythroid programs through H3K4 methylation remodeling 2. Beyond hematopoiesis, SAMD1 represses epithelial-mesenchymal transition genes in pancreatic cancer, with its expression inversely correlating with FBXO11-mediated disease progression 3. Clinically, SAMD1 expression is reduced in antiphospholipid syndrome patients and correlates with thrombotic history and pregnancy complications; SAMD1 restoration attenuates vascular injury and reduces fetal loss by regulating endothelial senescence and angiogenesis 4. In hepatocellular carcinoma, SAMD1 suppression enhances ferroptosis sensitivity and immune response to anti-PD-1 plus lenvatinib therapy 5.

Sources cited
1
SAMD1 binds unmethylated CpG islands via winged-helix domain; SAM domain mediates self-interactions with L3MBTL3; requires intrinsically disordered region for chromatin binding and polymerization
PMID: 40183636
2
SAMD1 promotes hematopoietic stem cell activity and opposes erythroid differentiation through H3K4 methylation remodeling; interacts with LSD1 histone demethylase; coordinates transcriptional activity during lineage differentiation
PMID: 40402130
3
SAMD1 acts as a transcriptional repressor of EMT-associated genes including CDH2 in pancreatic cancer; FBXO11 negatively regulates SAMD1 chromatin binding
PMID: 39137238
4
SAMD1 expression is reduced in antiphospholipid syndrome patients and correlates with thrombosis history and adverse pregnancies; overexpression reduces vascular injury, senescence, and fetal loss
PMID: 36039649
5
SAMD1 suppression in hepatocellular carcinoma enhances ferroptosis sensitivity and reduces immunosuppression through Hippo pathway regulation and H3K4me3 demethylation
PMID: 40414559
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
KCTD3Shared pathway100%IKZF4Shared pathway100%KCTD14Shared pathway100%KCTD15Shared pathway100%KCTD4Shared pathway100%KCTD18Shared pathway100%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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SAMD1KCTD3IKZF4KCTD14KCTD15KCTD4KCTD18
PROTEIN STRUCTURE
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PDB6LUJ · 1.12 Å · X-ray
View on RCSB ↗
RankingsWhere SAMD1 stands among ~20K protein-coding genes
  • #9,376of 20,598
    Most Researched46
Genes detectedSAMD1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
The SAMD1 transcription factor coordinates hematopoietic lineage differentiation and H3K4 methylation status.
PMID: 40402130
Blood Adv · 2025
1.00
2
Targeting SAMD1 enhances the effect of anti-PD-1 plus lenvatinib therapy in hepatocellular carcinoma by increasing ferroptosis sensitivity and immune response.
PMID: 40414559
Metabolism · 2025
0.90
3
Cooperation of a polymerizing SAM domain and an intrinsically disordered region enables full SAMD1 function on chromatin.
PMID: 40183636
Nucleic Acids Res · 2025
0.80
4
SAMD1 attenuates antiphospholipid syndrome-induced vascular injury and pregnancy complications.
PMID: 36039649
Immun Inflamm Dis · 2022
0.70
5
Comprehensive Genomic Analysis of Cemento-Ossifying Fibroma.
PMID: 37995913
Mod Pathol · 2024
0.60